Plasmid NZ_CP145191.1
Sequence
Nucleotide Information
| Accession | NZ_CP145191.1 |
|---|---|
| Description | Raoultella ornithinolytica strain CAV1817 plasmid pCAV1817-8756, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 8756 bp |
| GC Content | 0.51 % |
| Created at NCBI | April 5, 2024 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Raoultella ornithinolytica (54291) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Raoultella (160674) |
| Species | Raoultella_ornithinolytica (54291) |
| Strain |
Biosample
Curated Collection Information
| Accession | 22875531 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 38.14N;78.45W |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 38.14/-78.45 |
| Address | Aviation Drive, Deerwood, Albemarle County, Virginia, 22936, United States |
ECOSYSTEM
| Original Query | Hospital waste water |
|---|---|
| Classification | hospital,wastewater |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | adenine-specific methyltransferase EcoRI family protein | copy | ||
| PGAG | EcoRI family type II restriction endonuclease | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | recombinase family protein | copy | ||
| PGAG | Tn3-like element Tn5403 family transposase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| PGAG | replication initiation protein | copy | ||
| MOB-typer | rep_cluster_2335 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 13 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | KU302809_00001 | rep_cluster_2335 | 7304 | 7902 | plus | 89.917 | 99 | 0 | 767 |
| relaxase | NC_019986_00002 | MOBP | 1590 | 2972 | minus | 99.566 | 100 | 0 | 915 |
| relaxase | NC_001848_00006 | MOBP | 6778 | 7092 | minus | 92.453 | 99 | 1.3500000000000001e-58 | 200 |
| oriT | CP008720 | MOBP | 7207 | 7381 | minus | 96 | 100 | 1.21e-74 | 285 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |