PLSDB
v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid NZ_CP145188.1
Sequence
Nucleotide Information
Accession
NZ_CP145188.1
Description
Raoultella ornithinolytica strain CAV1817 plasmid pCAV1817-183, complete sequence
Source
refseq
Topology
circular
Length
183032 bp
GC Content
0.53 %
Created at NCBI
April 5, 2024
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Raoultella ornithinolytica (54291)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Raoultella (160674)
Species
Raoultella_ornithinolytica (54291)
Strain
Assembly
Genome Data Information
Accession
GCF_036789295.1
Assembly Coverage
29
Similar Plasmids
based on Mash distance
NZ_CP145164.1
See Comparison
NZ_CP145180.1
See Comparison
NZ_CP145164.1
See Comparison
NZ_CP145180.1
See Comparison
NZ_CP145164.1
See Comparison
NZ_CP145180.1
See Comparison
NZ_CP145164.1
See Comparison
NZ_CP145180.1
See Comparison
NZ_CP145164.1
See Comparison
NZ_CP145188.1
See Comparison
NZ_CP145180.1
See Comparison
NZ_CP145164.1
See Comparison
NZ_CP145180.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP145164.1
Sequence
Accession
:
NZ_CP145164.1
Description
: Raoultella ornithinolytica strain CAV1921 plasmid pCAV1921-183, complete sequence
Source
: refseq
Created at NCBI
: April 5, 2024
Host Taxonomy
Assigned Host
:
Raoultella ornithinolytica (54291)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Raoultella (160674)
Species
:
Raoultella_ornithinolytica (54291)
Strain
:
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore