Plasmid NZ_CP144250.1

Sequence

Nucleotide Information

Accession NZ_CP144250.1
Description Acinetobacter baumannii strain YFY24 plasmid pYFY24.1, complete sequence
Source refseq
Topology circular
Length 71277 bp
GC Content 0.33 %
Created at NCBI May 3, 2024



Biosample

Curated Collection Information
Accession 36374916

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 28.6829N;115.8582E
Original Query Type coordinates
Coordinates (Lat/Lon) 28.68/115.86
Address 滨江豪园社区, Shajing Subdistrict, Nanchang, Honggutan District, Nanchang, Jiangxi, 330008, China

ECOSYSTEM
Original Query patient,Nanchang
Classification host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query CRAB infection
DOID/SYMP
  • Acinetobacter infectious disease (DOID:3091 )
    • An opportunistic bacterial infectious disease that has_material_basis_in Acinetobacter.
    • Has_material_basis_in: ['acinetobacter']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP137070.1 See Comparison
NZ_CP142897.1 See Comparison
NZ_CP066233.1 See Comparison
NZ_CP066230.1 See Comparison
NZ_CP066238.1 See Comparison
NZ_CP066236.1 See Comparison
NZ_CP104909.1 See Comparison
NZ_CP104787.1 See Comparison
NZ_CP096706.1 See Comparison
CP096891.1 See Comparison
CP099787.1 See Comparison
NZ_CP096691.1 See Comparison
NZ_CP096744.1 See Comparison
NZ_CP017655.1 See Comparison
NZ_CP020589.1 See Comparison
NZ_CP020577.1 See Comparison
NZ_CP142897.1 See Comparison
NZ_CP137070.1 See Comparison
NC_017163.1 See Comparison
NZ_CP104909.1 See Comparison
NZ_CP066233.1 See Comparison
NZ_CP066230.1 See Comparison
NZ_CP066238.1 See Comparison
NZ_CP066236.1 See Comparison
NZ_CP104787.1 See Comparison
CP099787.1 See Comparison
NZ_CP017655.1 See Comparison
NZ_CP096706.1 See Comparison
NZ_CP096691.1 See Comparison
NZ_CP096744.1 See Comparison
NZ_CP020589.1 See Comparison
NZ_CP020577.1 See Comparison
CP096891.1 See Comparison
CP099787.1 See Comparison
NC_017163.1 See Comparison
NZ_CP142897.1 See Comparison
NZ_CP137070.1 See Comparison
NZ_CP066233.1 See Comparison
NZ_CP066230.1 See Comparison
NZ_CP066238.1 See Comparison
NZ_CP066236.1 See Comparison
NZ_CP104909.1 See Comparison
NZ_CP104787.1 See Comparison
NZ_CP020589.1 See Comparison
NZ_CP096706.1 See Comparison
NZ_CP096691.1 See Comparison
NZ_CP096744.1 See Comparison
CP096891.1 See Comparison
NZ_CP017655.1 See Comparison
NZ_CP137070.1 See Comparison
NZ_CP104909.1 See Comparison
NZ_CP104787.1 See Comparison
NZ_CP020589.1 See Comparison
NZ_CP020577.1 See Comparison
NC_017163.1 See Comparison
NZ_CP142897.1 See Comparison
NZ_CP066233.1 See Comparison
NZ_CP066230.1 See Comparison
NZ_CP066238.1 See Comparison
NZ_CP066236.1 See Comparison
CP099787.1 See Comparison
NZ_CP096706.1 See Comparison
NZ_CP096691.1 See Comparison
NZ_CP096744.1 See Comparison
CP096891.1 See Comparison
NZ_CP020577.1 See Comparison
NZ_CP137070.1 See Comparison
NZ_CP017655.1 See Comparison
NC_017163.1 See Comparison
NZ_CP066233.1 See Comparison
NZ_CP142897.1 See Comparison
NZ_CP066230.1 See Comparison
NZ_CP066238.1 See Comparison
NZ_CP066236.1 See Comparison
NZ_CP096706.1 See Comparison
NZ_CP104909.1 See Comparison
NZ_CP104787.1 See Comparison
CP099787.1 See Comparison
NZ_CP096691.1 See Comparison
NZ_CP096744.1 See Comparison
CP096891.1 See Comparison
NZ_CP020589.1 See Comparison
NZ_CP020577.1 See Comparison
NZ_CP137070.1 See Comparison
NZ_CP017655.1 See Comparison
NC_017163.1 See Comparison
NZ_CP144250.1 See Comparison
CP099787.1 See Comparison
NZ_CP142897.1 See Comparison
NZ_CP104787.1 See Comparison
NZ_CP066233.1 See Comparison
NZ_CP066230.1 See Comparison
NZ_CP066238.1 See Comparison
NZ_CP066236.1 See Comparison
NZ_CP104909.1 See Comparison
NZ_CP096706.1 See Comparison
NZ_CP096691.1 See Comparison
NZ_CP096744.1 See Comparison
CP096891.1 See Comparison
NZ_CP020589.1 See Comparison
NZ_CP020577.1 See Comparison
NZ_CP066233.1 See Comparison
NC_017163.1 See Comparison
NZ_CP017655.1 See Comparison
NZ_CP137070.1 See Comparison
NZ_CP142897.1 See Comparison
NZ_CP066230.1 See Comparison
NZ_CP066238.1 See Comparison
NZ_CP066236.1 See Comparison
CP099787.1 See Comparison
NZ_CP104909.1 See Comparison
NZ_CP104787.1 See Comparison
NZ_CP020589.1 See Comparison
NZ_CP096706.1 See Comparison
NZ_CP096691.1 See Comparison
NZ_CP096744.1 See Comparison
CP096891.1 See Comparison
NZ_CP020577.1 See Comparison
NC_017163.1 See Comparison
NZ_CP017655.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2