Plasmid NZ_CP142999.1

Sequence

Nucleotide Information

Accession NZ_CP142999.1
Description Klebsiella pneumoniae strain CRE-3 plasmid pKP3-1, complete sequence
Source refseq
Topology circular
Length 238522 bp
GC Content 0.50 %
Created at NCBI Jan. 31, 2024



Assembly

Genome Data Information

Accession GCF_036287455.1
Assembly Coverage 21


Biosample

Curated Collection Information
Accession 39484733

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 24.93908708N;121.36304945E
Original Query Type coordinates
Coordinates (Lat/Lon) 24.94/121.36
Address Kite-Elevating Avenue, Long'en Village, Sanxia District, Special-use Zone of National Taipei University, New Taipei, 23702, Taiwan

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteria infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP059296.1 See Comparison
NZ_CP024708.1 See Comparison
NZ_CP092537.1 See Comparison
NZ_CP147975.1 See Comparison
NZ_CP088990.1 See Comparison
CP052259.1 See Comparison
NZ_CP102439.1 See Comparison
NZ_CP142999.1 See Comparison
NZ_CP142996.1 See Comparison
NZ_KY070306.1 See Comparison
NZ_CP060282.1 See Comparison
NZ_CP092537.1 See Comparison
NZ_CP024708.1 See Comparison
NZ_CP059296.1 See Comparison
CP052259.1 See Comparison
NZ_CP142996.1 See Comparison
NZ_KY070306.1 See Comparison
NZ_CP147975.1 See Comparison
NZ_CP060282.1 See Comparison
NZ_CP088990.1 See Comparison
NZ_CP102439.1 See Comparison
NZ_CP024708.1 See Comparison
NZ_CP059296.1 See Comparison
CP052259.1 See Comparison
NZ_CP147975.1 See Comparison
NZ_CP142996.1 See Comparison
NZ_KY070306.1 See Comparison
NZ_CP092537.1 See Comparison
NZ_CP060282.1 See Comparison
NZ_CP088990.1 See Comparison
NZ_CP102439.1 See Comparison
NZ_CP147975.1 See Comparison
NZ_CP059296.1 See Comparison
NZ_CP024708.1 See Comparison
NZ_CP092537.1 See Comparison
NZ_CP142996.1 See Comparison
CP052259.1 See Comparison
NZ_KY070306.1 See Comparison
NZ_CP024708.1 See Comparison
NZ_CP088990.1 See Comparison
NZ_CP059296.1 See Comparison
NZ_CP060282.1 See Comparison
NZ_CP102439.1 See Comparison
NZ_CP147975.1 See Comparison
NZ_CP092537.1 See Comparison
NZ_CP102439.1 See Comparison
NZ_KY070306.1 See Comparison
NZ_CP060282.1 See Comparison
NZ_CP142996.1 See Comparison
CP052259.1 See Comparison
NZ_CP024708.1 See Comparison
NZ_CP088990.1 See Comparison
NZ_CP059296.1 See Comparison
CP052259.1 See Comparison
NZ_CP147975.1 See Comparison
NZ_KY070306.1 See Comparison
NZ_CP092537.1 See Comparison
NZ_CP142996.1 See Comparison
NZ_CP088990.1 See Comparison
NZ_CP060282.1 See Comparison
NZ_CP102439.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore