Plasmid NZ_CP142963.1
Sequence
Nucleotide Information
| Accession | NZ_CP142963.1 |
|---|---|
| Description | Escherichia coli strain EC200461 plasmid pEC200461_7, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 3257 bp |
| GC Content | 0.47 % |
| Created at NCBI | Jan. 31, 2024 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 39501436 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Ireland |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 52.87/-7.98 |
| Address | Ireland |
ECOSYSTEM
| Original Query | Homo sapiens,cell culture,rectal swab |
|---|---|
| Classification | cell_culture,gastrointestinal_system,host_associated,rectal |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | type II toxin-antitoxin system RelE/ParE family toxin | copy | ||
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| PGAG | HigA family addiction module antitoxin | copy | ||
| MOB-typer | rep_cluster_2350 | copy | ||
| MOB-typer | MOBF | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 7 of 7 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | KT950740 | MOBF | 915 | 1171 | minus | 96.512 | 89 | 1.21e-116 | 425 |
| oriT | NC_019986 | MOB_unknown | 1295 | 1394 | minus | 100 | 100 | 6.22e-45 | 185 |
| oriT | CP018844 | MOBP | 1697 | 1780 | minus | 100 | 100 | 3.79e-36 | 156 |
| replicon | CP035723_00002 | rep_cluster_2350 | 1792 | 2347 | plus | 94.434 | 99 | 0 | 854 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |