Plasmid NZ_CP142591.1

Sequence

Nucleotide Information

Accession NZ_CP142591.1
Description Escherichia coli strain 64 plasmid unnamed
Source refseq
Topology linear
Length 93378 bp
GC Content 0.50 %
Created at NCBI Jan. 28, 2024



Assembly

Genome Data Information

Accession GCF_036222425.1
Assembly Coverage 53.28


Biosample

Curated Collection Information
Accession 39455009

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Heilongjiang Province
Original Query Type name
Coordinates (Lat/Lon) 48.00/128.00
Address China,Heilongjiang Province

ECOSYSTEM
Original Query mixed culture,Sika deer feces
Classification cell_culture,fecal,host_associated
Host-associated Taxon
  • Cervus nippon (9863)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_AP025206.2 See Comparison
NZ_CP149217.1 See Comparison
NZ_CP149271.1 See Comparison
NZ_CP149259.1 See Comparison
NZ_CP149230.1 See Comparison
NZ_CP149284.1 See Comparison
NZ_CP149280.1 See Comparison
NZ_CP149217.1 See Comparison
NZ_AP025206.2 See Comparison
NZ_CP149271.1 See Comparison
NZ_CP149259.1 See Comparison
NZ_CP149230.1 See Comparison
NZ_CP149284.1 See Comparison
CP148777.1 See Comparison
NZ_CP063502.1 See Comparison
NZ_CP149280.1 See Comparison
CP148777.1 See Comparison
NZ_CP063502.1 See Comparison
CP148777.1 See Comparison
NZ_AP025206.2 See Comparison
NZ_CP149271.1 See Comparison
NZ_CP149259.1 See Comparison
NZ_CP149230.1 See Comparison
NZ_CP149284.1 See Comparison
NZ_CP149217.1 See Comparison
NZ_CP149280.1 See Comparison
NZ_CP063502.1 See Comparison
NZ_AP025206.2 See Comparison
NZ_CP149271.1 See Comparison
NZ_CP149259.1 See Comparison
NZ_CP149230.1 See Comparison
NZ_CP149284.1 See Comparison
NZ_CP149217.1 See Comparison
NZ_CP149280.1 See Comparison
NZ_CP063502.1 See Comparison
CP148777.1 See Comparison
NZ_CP149271.1 See Comparison
NZ_AP025206.2 See Comparison
NZ_CP149259.1 See Comparison
NZ_CP149230.1 See Comparison
NZ_CP149284.1 See Comparison
NZ_CP063502.1 See Comparison
NZ_CP142591.1 See Comparison
NZ_CP149217.1 See Comparison
NZ_CP149280.1 See Comparison
CP148777.1 See Comparison
NZ_CP149217.1 See Comparison
NZ_CP149280.1 See Comparison
NZ_CP063502.1 See Comparison
NZ_AP025206.2 See Comparison
NZ_CP149271.1 See Comparison
NZ_CP149259.1 See Comparison
NZ_CP149230.1 See Comparison
NZ_CP149284.1 See Comparison
CP148777.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore