Plasmid NZ_CP141548.1
Sequence
Nucleotide Information
| Accession | NZ_CP141548.1 |
|---|---|
| Description | Klebsiella pneumoniae strain KP75_L14_02.23_ST20_OXA181 plasmid pK75_unnamed, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 195469 bp |
| GC Content | 0.51 % |
| Created at NCBI | Jan. 17, 2024 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 38771717 |
|---|
PLASMID INFORMATION
| Genotype | ST2096 |
|---|
GEOGRAPHICAL INFORMATION
| Original Query | United Kingdom,England |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 52.80/-0.54 |
| Address | United Kingdom,England |
ECOSYSTEM
| Original Query | Homo sapiens,pure culture,blood |
|---|---|
| Classification | blood,cell_culture,circulatory_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
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100
Hex
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | psi-GI | copy | ||
| amrfinderplus | pcoS | copy | ||
| amrfinderplus | pcoD | copy | ||
| amrfinderplus | pcoR | copy | ||
| amrfinderplus | pcoB | copy | ||
| amrfinderplus | shsP | copy | ||
| amrfinderplus | yfdX2 | copy | ||
| amrfinderplus | pcoC | copy | ||
| amrfinderplus | trxLHR | copy | ||
| amrfinderplus | yfdX1 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 176 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000107__CP014778_00094 | IncFIB | 105210 | 106220 | plus | 99.407 | 100 | 0 | 1834 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
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Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |