Plasmid NZ_CP140511.1
Sequence
Nucleotide Information
| Accession | NZ_CP140511.1 |
|---|---|
| Description | Klebsiella pneumoniae strain 2023CK-01432 plasmid unnamed1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 343675 bp |
| GC Content | 0.47 % |
| Created at NCBI | Dec. 14, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 38646027 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | USA |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 39.78/-100.45 |
| Address | USA |
ECOSYSTEM
| Original Query | Homo sapiens,urine |
|---|---|
| Classification | host_associated,urinary_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | terE | copy | ||
| amrfinderplus | terD | copy | ||
| amrfinderplus | terC | copy | ||
| amrfinderplus | terB | copy | ||
| amrfinderplus | sul1 | copy | ||
| amrfinderplus | dfrA5 | copy | ||
| amrfinderplus | blaNDM-5 | copy | ||
| amrfinderplus | blaCTX-M-15 | copy | ||
| amrfinderplus | aph(3')-VI | copy | ||
| amrfinderplus | ble | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 358 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | JN420336 | IncHI1B | 86 | 655 | minus | 99.474 | 100 | 0 | 1037 |
| replicon | CP024497_00001 | IncFIB | 327777 | 328839 | minus | 92.857 | 98 | 0 | 1543 |
| relaxase | NC_016980_00239 | MOBH | 251528 | 254458 | plus | 87.882 | 100 | 0 | 1701 |
| mate-pair-formation | NC_016980_00110 | MPF_F | 35040 | 36074 | minus | 100 | 100 | 0 | 719 |
| mate-pair-formation | NC_016980_00109 | MPF_F | 36074 | 37432 | minus | 99.779 | 100 | 0 | 937 |
| mate-pair-formation | NC_016980_00099 | MPF_T | 46909 | 49623 | minus | 99.669 | 100 | 0 | 1840 |
| mate-pair-formation | NC_018107_00235 | MPF_F | 53584 | 54750 | minus | 93.316 | 100 | 0 | 709 |
| mate-pair-formation | NC_023911_00309 | MPF_F | 54755 | 55612 | minus | 92.308 | 100 | 3.73e-172 | 534 |
| mate-pair-formation | NC_018107_00101 | MPF_F | 244837 | 246276 | minus | 96.458 | 100 | 0 | 925 |
| mate-pair-formation | NC_016980_00240 | MPF_F | 254451 | 256574 | plus | 99.718 | 100 | 0 | 1477 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 10 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |