Plasmid NZ_CP139490.1

Sequence

Nucleotide Information

Accession NZ_CP139490.1
Description Klebsiella pneumoniae strain HZKP2 plasmid pHZKP2_2, complete sequence
Source refseq
Topology circular
Length 98536 bp
GC Content 0.53 %
Created at NCBI Dec. 13, 2023



Assembly

Genome Data Information

Accession GCF_034259225.1
Assembly Coverage 150


Biosample

Curated Collection Information
Accession 38478866

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Hangzhou
Original Query Type name
Coordinates (Lat/Lon) 30.25/120.21
Address China,Hangzhou

ECOSYSTEM
Original Query pure culture,Ascites
Classification cell_culture,disease,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP
  • Ascites (SYMP:0000526 )
    • An abdominal symptom consisting of an abnormal accumulation of serous fluid in the spaces between tissues and organs in the cavity of the abdomen.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP139490.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplussul2copy
amrfinderplustet(A)copy
rgiTEM-244copy
amrfinderplusaph(6)-Idcopy
amrfinderplusblaCTX-M-55copy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusfloRcopy
PGAGrepAcopy
PGAGIS91 family transposasecopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 125 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTAP014804MOBP6103161500plus88.494854.93e-158564
repliconMH263653_00001IncFIA103858plus10010001397
replicon000155__CP018649IncN2138122065plus99.8549501260
repliconJN232517IncFII9828098536minus100991.05e-131475
relaxaseNC_017627_00068MOBF8887794144plus97.43710003340
mate-pair-formationNC_022651_00077MPF_F6356363871plus100994.39e-63213
mate-pair-formationNC_010409_00124MPF_F6444965174plus98.761004.19e-156486
mate-pair-formationNC_019094_00090MPF_F6517766571plus95.923960832
mate-pair-formationNC_017639_00094MPF_F6762868140plus97.0761003.9000000000000004e-98316
mate-pair-formationNC_013437_00116MPF_T6865971280plus90.5039901640
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2