Plasmid NZ_CP139415.1

Sequence

Nucleotide Information

Accession NZ_CP139415.1
Description Klebsiella aerogenes strain C272187 plasmid pC272187-KPC_94k, complete sequence
Source refseq
Topology circular
Length 94042 bp
GC Content 0.53 %
Created at NCBI Dec. 7, 2023



Assembly

Genome Data Information

Accession GCF_034132705.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 38397050

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 29.86N;121.56E
Original Query Type coordinates
Coordinates (Lat/Lon) 29.86/121.56
Address Baihe, Yinzhou District, Ningbo, Zhejiang, 315000, China

ECOSYSTEM
Original Query Homo sapiens,swab
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query cerebral hemorrhage
DOID/SYMP
  • Cerebrovascular accident (SYMP:0020056 )
    • A nervous system symptom that is characterized by a loss of blood flow to part of the brain, which damages brain tissue. Cerebrovascular accidents are caused by blood clots and broken blood vessels in the brain.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP100086.1 See Comparison
NZ_CP100108.1 See Comparison
NZ_CP100112.1 See Comparison
NZ_CP100096.1 See Comparison
NZ_CP100100.1 See Comparison
NZ_CP107245.1 See Comparison
NZ_CP064771.1 See Comparison
NZ_CP047680.1 See Comparison
NZ_CP100086.1 See Comparison
NZ_CP100108.1 See Comparison
NZ_CP100112.1 See Comparison
NZ_CP100096.1 See Comparison
NZ_CP100100.1 See Comparison
NZ_CP107245.1 See Comparison
NZ_CP047680.1 See Comparison
NZ_CP064771.1 See Comparison
NZ_CP100086.1 See Comparison
NZ_CP100108.1 See Comparison
NZ_CP100112.1 See Comparison
NZ_CP100096.1 See Comparison
NZ_CP100100.1 See Comparison
NZ_CP107245.1 See Comparison
NZ_CP100086.1 See Comparison
NZ_CP139415.1 See Comparison
NZ_CP047680.1 See Comparison
NZ_CP100096.1 See Comparison
NZ_CP100100.1 See Comparison
NZ_CP107245.1 See Comparison
NZ_CP064771.1 See Comparison
NZ_CP100108.1 See Comparison
NZ_CP100112.1 See Comparison
NZ_CP100086.1 See Comparison
NZ_CP064771.1 See Comparison
NZ_CP047680.1 See Comparison
NZ_CP100096.1 See Comparison
NZ_CP100100.1 See Comparison
NZ_CP100108.1 See Comparison
NZ_CP100112.1 See Comparison
NZ_CP107245.1 See Comparison
NZ_CP064771.1 See Comparison
NZ_CP064771.1 See Comparison
NZ_CP100096.1 See Comparison
NZ_CP100100.1 See Comparison
NZ_CP107245.1 See Comparison
NZ_CP047680.1 See Comparison
NZ_CP100086.1 See Comparison
NZ_CP100108.1 See Comparison
NZ_CP100112.1 See Comparison
NZ_CP047680.1 See Comparison
NZ_CP100086.1 See Comparison
NZ_CP100108.1 See Comparison
NZ_CP100112.1 See Comparison
NZ_CP100096.1 See Comparison
NZ_CP100100.1 See Comparison
NZ_CP064771.1 See Comparison
NZ_CP107245.1 See Comparison
NZ_CP047680.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2