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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP139343.1
Sequence
Nucleotide Information
Accession
NZ_CP139343.1
Description
Escherichia coli strain YZ22MPE6 plasmid pYUYZMPE6-4, complete sequence
Source
refseq
Topology
circular
Length
2028 bp
GC Content
0.52 %
Created at NCBI
Dec. 7, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_034119765.1
Assembly Coverage
100
Biosample
Curated Collection Information
Accession
38245691
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
32.24N;119.26E
Original Query Type
coordinates
Coordinates (Lat/Lon)
32.24/119.26
Address
滨江路, 十二圩街道, Yizheng, Yangzhou City, Jiangsu, 211400, China
ECOSYSTEM
Original Query
pork
Classification
host_associated
Host-associated Taxon
Sus scrofa (
9823
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP139342.1
NZ_CP139341.1
NZ_CP139340.1
Similar Plasmids
based on Mash distance
NZ_AP027843.1
See Comparison
NZ_CP139343.1
See Comparison
NZ_CP063348.1
See Comparison
NZ_CP063339.1
See Comparison
AP022430.1
See Comparison
NZ_CP091776.1
See Comparison
NZ_CP043293.1
See Comparison
NZ_CP073973.1
See Comparison
NZ_CP058838.1
See Comparison
NZ_CP058845.1
See Comparison
NZ_AP027843.1
See Comparison
NZ_CP058838.1
See Comparison
AP022430.1
See Comparison
NZ_CP073973.1
See Comparison
NZ_CP063348.1
See Comparison
NZ_CP063339.1
See Comparison
NZ_CP043293.1
See Comparison
NZ_CP058845.1
See Comparison
NZ_CP091776.1
See Comparison
NZ_CP058838.1
See Comparison
NZ_AP027843.1
See Comparison
NZ_CP063339.1
See Comparison
NZ_CP073973.1
See Comparison
NZ_CP063348.1
See Comparison
AP022430.1
See Comparison
NZ_CP058845.1
See Comparison
NZ_CP091776.1
See Comparison
NZ_CP043293.1
See Comparison
NZ_AP027843.1
See Comparison
AP022430.1
See Comparison
NZ_CP063348.1
See Comparison
NZ_CP063339.1
See Comparison
NZ_CP043293.1
See Comparison
NZ_CP073973.1
See Comparison
NZ_CP058838.1
See Comparison
NZ_CP058845.1
See Comparison
AP022430.1
See Comparison
NZ_CP091776.1
See Comparison
NZ_CP073973.1
See Comparison
NZ_CP043293.1
See Comparison
NZ_CP091776.1
See Comparison
NZ_AP027843.1
See Comparison
NZ_CP063348.1
See Comparison
NZ_CP063339.1
See Comparison
NZ_AP027843.1
See Comparison
NZ_CP063348.1
See Comparison
NZ_CP063339.1
See Comparison
AP022430.1
See Comparison
NZ_CP058838.1
See Comparison
NZ_CP058845.1
See Comparison
NZ_CP073973.1
See Comparison
NZ_CP043293.1
See Comparison
NZ_CP058838.1
See Comparison
NZ_CP058845.1
See Comparison
NZ_CP091776.1
See Comparison
NZ_AP027843.1
See Comparison
NZ_CP063348.1
See Comparison
NZ_CP063339.1
See Comparison
NZ_CP073973.1
See Comparison
AP022430.1
See Comparison
NZ_CP058838.1
See Comparison
NZ_CP043293.1
See Comparison
NZ_CP058845.1
See Comparison
NZ_CP091776.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_AP027843.1
Sequence
Accession
:
NZ_AP027843.1
Description
: Escherichia coli strain 2017.17.03CC plasmid p2017.17.03CC_14, complete sequence
Source
: refseq
Created at NCBI
: April 4, 2024
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
38124493
GEOGRAPHICAL INFORMATION
Original Query
: Viet Nam,Thai Binh
Original Query Type
: name
Address
: Viet Nam,Thai Binh
Coordinates
(Lat/Lon): 20.53/106.39
ECOSYSTEM
Original Query
: Homo sapiens,whole organism,feces
Classification
: fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP073973.1
Sequence
Accession
:
NZ_CP073973.1
Description
: Escherichia coli strain MB30 plasmid pYLMB30e, complete sequence
Source
: refseq
Created at NCBI
: Aug. 10, 2022
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
18877308
GEOGRAPHICAL INFORMATION
Original Query
: Cuba,Santa Cruz del Norte
Original Query Type
: name
Address
: Cuba,Santa Cruz del Norte
Coordinates
(Lat/Lon): 23.15/-81.92
ECOSYSTEM
Original Query
: Poultry,pure culture,Cloacal sample
Classification
: cell_culture,host_associated
Host-associated Taxon
:
Gallus gallus (
9031
)
Visualization
PNG
JSON
NZ_CP043293.1
Sequence
Accession
:
NZ_CP043293.1
Description
: Escherichia coli strain WCHEC025985 plasmid p6_025985, complete sequence
Source
: refseq
Created at NCBI
: March 15, 2022
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
12158048
GEOGRAPHICAL INFORMATION
Original Query
: China,Chengdu,Sichuan
Original Query Type
: name
Address
: China,Chengdu,Sichuan
Coordinates
(Lat/Lon): 30.64/104.07
ECOSYSTEM
Original Query
: Homo sapiens,pure culture
Classification
: cell_culture,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
Detected typing markers by plasmidfinder
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2