PLSDB
v. 2024_05_31_v2
Home
Browse
Sequence Search
Statistics
Download
API
FAQ
Sequence
Host Taxonomy
Assembly
Biosample
Similar Plasmids
Visualization
Annotations
Antimicrobial Resistance Genes
Typing
Plasmid NZ_CP137197.1
Sequence
Nucleotide Information
Accession
NZ_CP137197.1
Description
Citrobacter freundii strain F2021 plasmid pF2021-NDM, complete sequence
Source
refseq
Topology
circular
Length
98831 bp
GC Content
0.56 %
Created at NCBI
Nov. 21, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Citrobacter freundii (546)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Citrobacter (544)
Species
Citrobacter_freundii (546)
Strain
Assembly
Genome Data Information
Accession
GCF_036289185.1
Assembly Coverage
200
Biosample
Curated Collection Information
Accession
37934525
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
29.86N;121.56E
Original Query Type
coordinates
Coordinates (Lat/Lon)
29.86/121.56
Address
Baihe, Yinzhou District, Ningbo, Zhejiang, 315000, China
ECOSYSTEM
Original Query
Homo sapiens,urine
Classification
host_associated,urinary_system
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
Acute cerebral infarction
DOID/SYMP
Cerebral infarction
(
DOID:3526
)
A cerebrovascular disease that is characterized by an area of necrotic tissue in the brain resulting from a blockage or narrowing in the arteries supplying blood and oxygen to the brain.
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
NZ_CP137196.1
NZ_CP137198.1
NZ_CP137194.1
Similar Plasmids
based on Mash distance
NZ_CP137482.1
See Comparison
NZ_CP137197.1
See Comparison
NZ_CP137482.1
See Comparison
NZ_CP137482.1
See Comparison
NZ_CP137482.1
See Comparison
NZ_CP137482.1
See Comparison
NZ_CP137482.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore