Plasmid NZ_CP137197.1

Sequence

Nucleotide Information

Accession NZ_CP137197.1
Description Citrobacter freundii strain F2021 plasmid pF2021-NDM, complete sequence
Source refseq
Topology circular
Length 98831 bp
GC Content 0.56 %
Created at NCBI Nov. 21, 2023



Assembly

Genome Data Information

Accession GCF_036289185.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 37934525

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 29.86N;121.56E
Original Query Type coordinates
Coordinates (Lat/Lon) 29.86/121.56
Address Baihe, Yinzhou District, Ningbo, Zhejiang, 315000, China

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Acute cerebral infarction
DOID/SYMP
  • Cerebral infarction (DOID:3526 )
    • A cerebrovascular disease that is characterized by an area of necrotic tissue in the brain resulting from a blockage or narrowing in the arteries supplying blood and oxygen to the brain.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusrmtCcopy
amrfinderplussul1copy
amrfinderplusblaNDM-1copy
amrfinderplusblecopy
rgirmtCcopy
rgiBRP(MBL)copy
PGAGRepB family plasmid replication initiator proteincopy
PGAGIS3-like element ISSen4 family transposasecopy
PGAGGntP family transportercopy
PGAGsite-specific integrasecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 124 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconCP019182_00137IncFIB1978plus93.6810001465
repliconAJ851089IncFII6721167475minus85.3931005.35e-70270
repliconCP042519_00001rep_cluster_22726758168336plus99.86810001391
relaxaseNC_021501_00073MOBF5851263749plus10010003410
mate-pair-formationNC_021501_00097MPF_F3638936691plus1001001.07e-62211
mate-pair-formationNC_006323_00096MPF_F3799239383plus98.7071000833
mate-pair-formationNC_006323_00097MPF_F3940839944plus96.0891004.64e-100322
mate-pair-formationNC_009378_00101MPF_T4141444038plus99.7719901784
mate-pair-formationNC_006323_00105MPF_F4444245032plus98.477928.03e-125395
mate-pair-formationNC_021501_00085MPF_F4503246021plus99.6971000640
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2