Plasmid NZ_CP136605.1

Sequence

Nucleotide Information

Accession	NZ_CP136605.1
Description	Citrobacter portucalensis strain L2724hy plasmid p4-L2724hy, complete sequence
Source	refseq
Topology	circular
Length	45944 bp
GC Content	0.52 %
Created at NCBI	Jan. 26, 2024

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Citrobacter portucalensis (1639133)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Citrobacter (544)
Species	Citrobacter_portucalensis (1639133)
Strain

Assembly

Genome Data Information

Accession	GCF_032917905.1
Assembly Coverage	201

Biosample

Curated Collection Information

Accession	37738783

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	China,Hangzhou
Original Query Type	name
Coordinates (Lat/Lon)	30.25/120.21
Address	China,Hangzhou

ECOSYSTEM

Original Query	Homo sapiens,faeces
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP136605.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

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Greens

100

Hex

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B

Search:

Source	Element Name	Display	Sequence	Favorite

rgi	mphA		copy
rgi	Mrx		copy
amrfinderplus	mph(A)		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
PGAG	IS481-like element ISKpn27 family transposase		copy
PGAG	recombinase family protein		copy
PGAG	Tn3-like element Tn3 family transposase		copy
PGAG	hypothetical protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 52 entries

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

oriT	NZ_CP016035	MOBF	20307	20565	minus	81.273	96	7.34e-49	200
replicon	000204__CP008701_00115	IncR	30988	31883	minus	99.442	100	0	1626
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 2 of 2 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2