Plasmid NZ_CP136529.1

Sequence

Nucleotide Information

Accession NZ_CP136529.1
Description Staphylococcus aureus strain BAA-1556_Catania plasmid pUSA03, complete sequence
Source refseq
Topology circular
Length 37136 bp
GC Content 0.29 %
Created at NCBI Oct. 20, 2023



Assembly

Genome Data Information

Accession GCF_032809245.1
Assembly Coverage 85


Biosample

Curated Collection Information
Accession 37705136

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.52N;15.06E
Original Query Type coordinates
Coordinates (Lat/Lon) 37.52/15.06
Address Via Fondo Cosentino, San Nullo, San Giovanni Galermo-Trappeto-Cibali, Catania, Sicily, 95123, Italy

ECOSYSTEM
Original Query Homo sapiens,University of Catania
Classification host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Skin infection
DOID/SYMP
  • Skin disease (DOID:37 )
    • An integumentary system disease that is located_in skin.
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP136525.1
    • Description: Staphylococcus aureus strain BAA-1556_Catania_SCV plasmid pUSA03, complete sequence
    • Source: refseq
    • Created at NCBI: Oct. 20, 2023

  • Host Taxonomy
    Assigned Host: Staphylococcus aureus (1280)
  • Biosample
    Accession: 37705137
  • GEOGRAPHICAL INFORMATION
    • Original Query: 37.52N;15.06E
    • Original Query Type: coordinates
    • Address: Via Fondo Cosentino, San Nullo, San Giovanni Galermo-Trappeto-Cibali, Catania, Sicily, 95123, Italy
    • Coordinates (Lat/Lon): 37.52/15.06
  • ECOSYSTEM
    • Original Query: Homo sapiens,University of Catania
    • Classification: host_associated,location
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Skin infection
    • DOID/SYMP:
      • Skin disease (DOID:37 )
        • An integumentary system disease that is located_in skin.
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiStaphylococcus aureus mupA conferring resistance to mupirocincopy
rgiErmCcopy
amrfinderplusmupAcopy
amrfinderpluserm(C)copy
PGAGreplication initiator protein Acopy
PGAGIS6 family transposasecopy
PGAGfructosamine kinase family proteincopy
PGAGIS6-like element IS257 family transposasecopy
PGAGreplication/maintenance protein RepLcopy
PGAGIS6-like element IS257 family transposasecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 47 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_010279_00007MPF_T1250514514plus97.9110001240
mate-pair-formationNC_013653_00035MPF_T1999321606plus97.222990873
replicon000421__NC_013320_00022rep_cluster_11421011060plus10010001773
repliconNC001390rep_cluster_194766817167plus99.5911000891
relaxaseNC_013653_00017MOBQ3214933255minus95.3931000710
relaxaseNC_013653_00017MOBQ3325134144minus98.6581000608
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 6 of 6 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2