Plasmid NZ_CP135230.1
Sequence
Nucleotide Information
| Accession | NZ_CP135230.1 |
|---|---|
| Description | Escherichia coli strain Escherichia coli EC16611 plasmid pEC16611-3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 5073 bp |
| GC Content | 0.53 % |
| Created at NCBI | Oct. 7, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 37528253 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Canada |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 61.07/-107.99 |
| Address | Canada |
ECOSYSTEM
| Original Query | Homo sapiens |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Plasmid Visualization
Grays
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100
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G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | hypothetical protein | copy | ||
| PGAG | IS6-like element IS26 family transposase | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | rep_cluster_2335 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 10 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_013090_00004 | MOBP | 2591 | 4075 | plus | 91.313 | 99 | 0 | 881 |
| oriT | HQ328804 | MOBP | 1991 | 2164 | plus | 94.828 | 100 | 9.34e-71 | 272 |
| replicon | KU302809_00001 | rep_cluster_2335 | 1521 | 2067 | minus | 93.078 | 90 | 0 | 800 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |