Plasmid NZ_CP134665.1

Sequence

Nucleotide Information

Accession NZ_CP134665.1
Description Escherichia coli strain 64A:C plasmid unnamed6, complete sequence
Source refseq
Topology circular
Length 8146 bp
GC Content 0.50 %
Created at NCBI Sept. 25, 2023



Biosample

Curated Collection Information
Accession 37298519

PLASMID INFORMATION
Genotype ST1883 (Achtman)

GEOGRAPHICAL INFORMATION
Original Query 43.38N;4.86E
Original Query Type coordinates
Coordinates (Lat/Lon) 43.38/4.86
Address Carteau, Port-Saint-Louis-du-Rhône, Istres, Bouches-du-Rhône, Provence-Alpes-Côte d'Azur, Metropolitan France, 13230, France

ECOSYSTEM
Original Query Larus michahellis,bacteria,cloaca
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGmobCcopy
PGAGmobQcopy
PGAGreplication initiation proteincopy
PGAGmobCcopy
PGAGmobQcopy
MOB-typerMOBQcopy
MOB-typerMOBQcopy
MOB-typerMOBQcopy
MOB-typerMOBQcopy
MOB-typerMOBQcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 14 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTNC_013327MOBQ12491426minus99.4381002.610000000000001e-86324
oriTNC_009791MOBQ14261785plus98.0561003.94e-177627
oriTNC_013327MOBQ53235500minus99.4381002.610000000000001e-86324
oriTNC_009791MOBQ55005859plus98.0561003.94e-177627
replicon001198__NC_010486_00001rep_cluster_17781462minus85.7751001.1e-135490
replicon001202__CP011432_00001rep_cluster_177838444536minus95.96510001125
replicon001202__CP011432_00001rep_cluster_177879188146minus93.4781001.15e-90340
relaxaseNC_011411_00002MOBQ13403583plus99.06410001496
relaxaseNC_011411_00002MOBQ54147657plus99.06410001496
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 9 of 9 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2