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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP133708.1
Sequence
Nucleotide Information
Accession
NZ_CP133708.1
Description
Acinetobacter baumannii strain CRAb2 plasmid unnamed02, complete sequence
Source
refseq
Topology
circular
Length
101308 bp
GC Content
0.39 %
Created at NCBI
April 25, 2024
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Acinetobacter baumannii (470)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Moraxellales (2887326)
Family
Moraxellaceae (468)
Genus
Acinetobacter (469)
Species
Acinetobacter_baumannii (470)
Strain
Biosample
Curated Collection Information
Accession
37223190
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
51.883331N;5.433331E
Original Query Type
coordinates
Coordinates (Lat/Lon)
51.88/5.43
Address
25, Nieuwe Tielseweg, Sterrebos, Tiel, Gelderland, Netherlands, 4001 JS, Netherlands
ECOSYSTEM
Original Query
Homo sapiens,sputum
Classification
host_associated,respiratory_system
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
COVID-19
DOID/SYMP
Covid19
(
DOID:0080600
)
A Coronavirus infectious disease that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.
Has_material_basis_in: ['sars-cov-2']
Visualization
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Plasmids from same Biosample
NZ_CP133711.1
NZ_CP133709.1
Similar Plasmids
based on Mash distance
NZ_CP027185.1
See Comparison
NZ_CP027185.1
See Comparison
NZ_CP027182.1
See Comparison
NZ_CP027185.1
See Comparison
NZ_CP027182.1
See Comparison
NZ_CP027182.1
See Comparison
NZ_CP027185.1
See Comparison
NZ_CP027182.1
See Comparison
NZ_CP027185.1
See Comparison
NZ_CP027182.1
See Comparison
NZ_CP027185.1
See Comparison
NZ_CP027182.1
See Comparison
NZ_CP133708.1
See Comparison
NZ_CP027185.1
See Comparison
NZ_CP027182.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
Detected typing markers by plasmidfinder
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2