Plasmid NZ_CP133324.1

Sequence

Nucleotide Information

Accession NZ_CP133324.1
Description Salmonella enterica subsp. enterica serovar Enteritidis strain BAA-1045 plasmid pRHB18-C20_4, complete sequence
Source refseq
Topology circular
Length 6230 bp
GC Content 0.49 %
Created at NCBI Sept. 3, 2023



Assembly

Genome Data Information

Accession GCF_031021005.1
Assembly Coverage 6.4


Biosample

Curated Collection Information
Accession 37104682

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 60.00N;95.00W
Original Query Type coordinates
Coordinates (Lat/Lon) 60.00/-95.00
Address Kivalliq Region, Nunavut, Canada

ECOSYSTEM
Original Query raw almonds
Classification food,host_associated
Host-associated Taxon
  • Prunus dulcis (3755)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore