Plasmid NZ_CP133282.1

Sequence

Nucleotide Information

Accession NZ_CP133282.1
Description Salmonella enterica subsp. enterica serovar Panama strain B82 plasmid unnamed5, complete sequence
Source refseq
Topology circular
Length 4074 bp
GC Content 0.52 %
Created at NCBI Jan. 26, 2024



Assembly

Genome Data Information

Accession GCF_030980015.1
Assembly Coverage 1


Biosample

Curated Collection Information
Accession 37118176

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 16.439625N;102.828728E
Original Query Type coordinates
Coordinates (Lat/Lon) 16.44/102.83
Address Mittraphap Road, Thai Prasert 1 Village, Khon Kaen, Mueang Kao, Khon Kaen Province, 40000, Thailand

ECOSYSTEM
Original Query Human stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP082422.2 See Comparison
NZ_CP145702.1 See Comparison
NZ_CP115829.1 See Comparison
NZ_CP081197.1 See Comparison
NZ_CP008718.1 See Comparison
NZ_CP135717.1 See Comparison
CP082422.2 See Comparison
NZ_CP145702.1 See Comparison
NZ_CP081197.1 See Comparison
NZ_CP033765.1 See Comparison
NZ_CP126181.1 See Comparison
NZ_CP128617.1 See Comparison
NZ_CP115829.1 See Comparison
NZ_CP033765.1 See Comparison
NZ_CP008718.1 See Comparison
NZ_CP008718.1 See Comparison
NZ_CP135717.1 See Comparison
NZ_CP126181.1 See Comparison
CP082422.2 See Comparison
NZ_CP128617.1 See Comparison
NZ_CP145702.1 See Comparison
NZ_CP115829.1 See Comparison
NZ_CP081197.1 See Comparison
CP082422.2 See Comparison
NZ_CP033765.1 See Comparison
NZ_CP135717.1 See Comparison
NZ_CP126181.1 See Comparison
NZ_CP128617.1 See Comparison
NZ_CP145702.1 See Comparison
NZ_CP115829.1 See Comparison
NZ_CP081197.1 See Comparison
NZ_CP126181.1 See Comparison
NZ_CP008718.1 See Comparison
NZ_CP033765.1 See Comparison
NZ_CP135717.1 See Comparison
NZ_CP128617.1 See Comparison
CP082422.2 See Comparison
NZ_CP008718.1 See Comparison
NZ_CP115829.1 See Comparison
NZ_CP081197.1 See Comparison
NZ_CP145702.1 See Comparison
NZ_CP133282.1 See Comparison
NZ_CP126181.1 See Comparison
NZ_CP033765.1 See Comparison
NZ_CP135717.1 See Comparison
NZ_CP145702.1 See Comparison
NZ_CP128617.1 See Comparison
CP082422.2 See Comparison
NZ_CP008718.1 See Comparison
NZ_CP081197.1 See Comparison
NZ_CP115829.1 See Comparison
NZ_CP135717.1 See Comparison
NZ_CP033765.1 See Comparison
NZ_CP128617.1 See Comparison
NZ_CP126181.1 See Comparison
CP082422.2 See Comparison
NZ_CP081197.1 See Comparison
NZ_CP145702.1 See Comparison
NZ_CP115829.1 See Comparison
NZ_CP008718.1 See Comparison
NZ_CP033765.1 See Comparison
NZ_CP135717.1 See Comparison
NZ_CP126181.1 See Comparison
NZ_CP128617.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2