Plasmid NZ_CP133225.1

Sequence

Nucleotide Information

Accession NZ_CP133225.1
Description Klebsiella quasipneumoniae subsp. similipneumoniae strain KQ20786 plasmid p2-KQ20786, complete sequence
Source refseq
Topology circular
Length 59761 bp
GC Content 0.52 %
Created at NCBI Sept. 8, 2023



Assembly

Genome Data Information

Accession GCF_030931735.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 37044514

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40N;117E
Original Query Type coordinates
Coordinates (Lat/Lon) 40.00/117.00
Address Qixinzhuang, Sanhe City, Langfang, Hebei, China

ECOSYSTEM
Original Query Homo sapiens,BALF
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Pneumoniae
DOID/SYMP
  • Pneumonia (DOID:552 )
    • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP050859.2 See Comparison
NZ_CP046118.1 See Comparison
NC_022375.2 See Comparison
NZ_CP092465.1 See Comparison
NZ_CP092465.1 See Comparison
NZ_CP093156.1 See Comparison
CP050859.2 See Comparison
NC_022375.2 See Comparison
CP040178.1 See Comparison
NZ_CP025965.2 See Comparison
NZ_CP138523.1 See Comparison
NZ_CP138536.1 See Comparison
NZ_CP133207.1 See Comparison
NZ_CP133225.1 See Comparison
NZ_CP046118.1 See Comparison
NZ_CP046118.1 See Comparison
CP040178.1 See Comparison
NZ_CP138523.1 See Comparison
NZ_CP138536.1 See Comparison
NZ_CP133207.1 See Comparison
NZ_CP093156.1 See Comparison
NZ_CP025965.2 See Comparison
CP050859.2 See Comparison
NC_022375.2 See Comparison
NZ_CP138523.1 See Comparison
NZ_CP092465.1 See Comparison
NZ_CP025965.2 See Comparison
NZ_CP093156.1 See Comparison
CP040178.1 See Comparison
NZ_CP138536.1 See Comparison
NZ_CP133207.1 See Comparison
NC_022375.2 See Comparison
CP050859.2 See Comparison
NZ_CP046118.1 See Comparison
NZ_CP093156.1 See Comparison
NZ_CP092465.1 See Comparison
CP050859.2 See Comparison
NZ_CP138523.1 See Comparison
NZ_CP138536.1 See Comparison
NZ_CP133207.1 See Comparison
CP040178.1 See Comparison
NZ_CP025965.2 See Comparison
NZ_CP093156.1 See Comparison
NZ_CP046118.1 See Comparison
NZ_CP092465.1 See Comparison
NC_022375.2 See Comparison
CP040178.1 See Comparison
NZ_CP138523.1 See Comparison
NZ_CP025965.2 See Comparison
NZ_CP138536.1 See Comparison
CP050859.2 See Comparison
NZ_CP133207.1 See Comparison
NZ_CP046118.1 See Comparison
NC_022375.2 See Comparison
NZ_CP138523.1 See Comparison
NZ_CP092465.1 See Comparison
NZ_CP093156.1 See Comparison
CP040178.1 See Comparison
NZ_CP025965.2 See Comparison
NZ_CP138536.1 See Comparison
NZ_CP133207.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore