Plasmid NZ_CP131957.1

Sequence

Nucleotide Information

Accession NZ_CP131957.1
Description Klebsiella pneumoniae strain KPN5752 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 116170 bp
GC Content 0.54 %
Created at NCBI Aug. 12, 2023



Assembly

Genome Data Information

Accession GCF_030704345.1
Assembly Coverage 400


Biosample

Curated Collection Information
Accession 36780135

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Anhui
Original Query Type name
Coordinates (Lat/Lon) 32.00/117.00
Address China,Anhui

ECOSYSTEM
Original Query mixed culture,stool
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgirmtBcopy
amrfinderplusmerCcopy
amrfinderplusrmtB1copy
amrfinderplusmerTcopy
amrfinderplusblaTEM-1copy
amrfinderplusblaKPC-2copy
PGAGIS6-like element IS26 family transposasecopy
PGAGhelix-turn-helix transcriptional regulatorcopy
PGAGtype II toxin-antitoxin system RelE/ParE family toxincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 151 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_022651_00077MPF_F6320063508plus100994.4e-63213
mate-pair-formationNC_010409_00124MPF_F6408664811plus98.761004.19e-156486
mate-pair-formationNC_019094_00090MPF_F6481466208plus95.923960832
mate-pair-formationNC_017639_00094MPF_F6726567777plus96.4911001.72e-97314
mate-pair-formationNC_013437_00116MPF_T6829670917plus90.5039901640
mate-pair-formationNC_007675_00027MPF_F7130371932plus99.048972.8999999999999996e-135425
mate-pair-formationNC_017639_00100MPF_F7193272888plus98.746910605
mate-pair-formationNC_019037_00027MPF_F7387074505plus92.9251005.37e-130409
mate-pair-formationNC_019094_00068MPF_F7532177168plus96.75310001157
mate-pair-formationNC_009837_00049MPF_F8097183922plus90.3659901795
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 14 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2