Plasmid NZ_CP130712.1

Sequence

Nucleotide Information

Accession NZ_CP130712.1
Description Escherichia coli strain DDG206 plasmid pDDG206-2, complete sequence
Source refseq
Topology linear
Length 97916 bp
GC Content 0.50 %
Created at NCBI Aug. 3, 2023



Assembly

Genome Data Information

Accession GCF_030553135.1
Assembly Coverage 328


Biosample

Curated Collection Information
Accession 36696311

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,WI
Original Query Type name
Coordinates (Lat/Lon) 44.43/-89.69
Address USA,WI

ECOSYSTEM
Original Query other,dried distillers grain
Classification food
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGprepilin, shufflon protein Acopy
PGAGsite-specific integrasecopy
PGAGtraEcopy
PGAGconjugal transfer protein TraFcopy
PGAGhistidine phosphatase family proteincopy
PGAGtraHcopy
PGAGtraIcopy
PGAGtraJcopy
PGAGhypothetical proteincopy
PGAGphospholipase D family proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 116 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_019097_00085MPF_I60636878plus99.2651006.3000000000000005e-177547
mate-pair-formationNZ_CM001473_00069MPF_I1275113095plus91.3791001.6699999999999998e-54189
mate-pair-formationNC_022267_00069MPF_I1309513742plus99.074915.71e-143448
mate-pair-formationNC_019097_00075MPF_I1379814778plus1001000658
mate-pair-formationNC_015965_00072MPF_I1607316774plus99.5731004.56e-153477
mate-pair-formationNC_023290_00086MPF_I1677717301plus99.4291003.4400000000000003e-100322
mate-pair-formationNC_019111_00038MPF_I1735517732plus96.032941.3000000000000002e-44161
mate-pair-formationNC_022267_00057MPF_I2251023709plus99.51000770
mate-pair-formationNC_019097_00056MPF_I3331135572plus98.4089201440
mate-pair-formationNC_014234_00057MPF_I9445894790plus99.099851.41e-64224
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 13 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2