Plasmid NZ_CP129507.1
Sequence
Nucleotide Information
| Accession | NZ_CP129507.1 |
|---|---|
| Description | Enterobacter asburiae strain MO13m20 plasmid p7MO13m20, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 6810 bp |
| GC Content | 0.55 % |
| Created at NCBI | July 17, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Enterobacter asburiae (61645) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Enterobacter (547) |
| Species | Enterobacter_asburiae (61645) |
| Strain |
Biosample
Curated Collection Information
| Accession | 35153056 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 49.130318N;16.633070E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 49.13/16.63 |
| Address | ČOV Brno - Modřice, 152, Modřice, okres Brno-venkov, Jihomoravský kraj, 664 42, Czechia |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | S-type pyocin domain-containing protein | copy | ||
| PGAG | entry exclusion protein 1 | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| PGAG | colicin release lysis protein | copy | ||
| PGAG | bacteriocin immunity protein | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | rep_cluster_2335 | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 11 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_011404_00002 | MOBP | 1405 | 2898 | minus | 94.2 | 100 | 0 | 910 |
| relaxase | NC_001848_00006 | MOBP | 2894 | 3211 | minus | 92.453 | 99 | 1.4600000000000006e-59 | 202 |
| oriT | CP008720 | MOBP | 3326 | 3500 | minus | 94.286 | 100 | 1.22e-69 | 268 |
| replicon | KU302809_00001 | rep_cluster_2335 | 3423 | 4004 | plus | 82.421 | 99 | 4.34e-139 | 501 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |