Plasmid NZ_CP129390.1

Sequence

Nucleotide Information

Accession NZ_CP129390.1
Description Salmonella enterica subsp. enterica serovar Infantis strain R13.1986 plasmid pR13.1986_3k, complete sequence
Source refseq
Topology circular
Length 3205 bp
GC Content 0.47 %
Created at NCBI July 19, 2023



Assembly

Genome Data Information

Accession GCF_030435995.1
Assembly Coverage 683


Biosample

Curated Collection Information
Accession 10434137

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Taiwan
Original Query Type name
Coordinates (Lat/Lon) 23.60/120.84
Address Taiwan

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGRop family plasmid primer RNA-binding proteincopy
PGAGreplication initiation proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
MOB-typerrep_cluster_2350copy
MOB-typerMOBPcopy
MOB-typerMOBFcopy
MOB-typerMOB_unknowncopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 8 of 8 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconCP041342_00001rep_cluster_2350385932plus94.718990852
oriTNZ_CP012632MOBP278363minus1001003.03e-37159
oriTKT950740MOBF26912947minus96.124895.65e-115420
oriTNC_019986MOB_unknown30713169minus97.98994.84e-41172
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2