Plasmid NZ_CP128462.1

Sequence

Nucleotide Information

Accession	NZ_CP128462.1
Description	Enterococcus faecalis strain RE25 plasmid pVPRE25a, complete sequence
Source	refseq
Topology	circular
Length	5141 bp
GC Content	0.37 %
Created at NCBI	July 3, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Enterococcus faecalis (1351)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacillota (1239)
Class	Bacilli (91061)
Order	Lactobacillales (186826)
Family	Enterococcaceae (81852)
Genus	Enterococcus (1350)
Species	Enterococcus_faecalis (1351)
Strain

Assembly

Genome Data Information

Accession	GCF_030376825.1
Assembly Coverage	268

Biosample

Curated Collection Information

Accession	35741683

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Switzerland
Original Query Type	name
Coordinates (Lat/Lon)	46.80/8.23
Address	Switzerland

ECOSYSTEM

Original Query	food,dry sausage
Classification	food
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_MF807213.1	See Comparison
LR962707.1	See Comparison
LR962689.1	See Comparison
LR962675.1	See Comparison
LR962668.1	See Comparison
LR962662.1	See Comparison
LR962624.1	See Comparison
LR962515.1	See Comparison
LR962511.1	See Comparison
LR962385.1	See Comparison
LR962366.1	See Comparison
LR962339.1	See Comparison
LR962322.1	See Comparison
LR962291.1	See Comparison
LR962246.1	See Comparison
LR962222.1	See Comparison
LR962209.1	See Comparison
LR962184.1	See Comparison
LR962136.1	See Comparison
LR962106.1	See Comparison
LR962100.1	See Comparison
LR962066.1	See Comparison
LR962048.1	See Comparison
LR962001.1	See Comparison
LR961985.1	See Comparison
LR961968.1	See Comparison
LR961964.1	See Comparison
CP118059.1	See Comparison
NZ_AP026725.1	See Comparison
NZ_CP110078.1	See Comparison
NZ_CP110045.1	See Comparison
NZ_CP091239.1	See Comparison
NZ_CP138639.1	See Comparison
NZ_CP085299.1	See Comparison
NZ_CP091910.1	See Comparison
NZ_CP124946.1	See Comparison
NZ_CP124897.1	See Comparison
NZ_CP139123.1	See Comparison
LR962662.1	See Comparison
NZ_MF807213.1	See Comparison
LR962624.1	See Comparison
LR962515.1	See Comparison
LR962511.1	See Comparison
LR962385.1	See Comparison
LR962366.1	See Comparison
LR962339.1	See Comparison
LR962322.1	See Comparison
LR962291.1	See Comparison
LR962246.1	See Comparison
LR962222.1	See Comparison
LR962209.1	See Comparison
LR962184.1	See Comparison
LR962136.1	See Comparison
LR962106.1	See Comparison
LR962100.1	See Comparison
LR962066.1	See Comparison
LR962048.1	See Comparison
LR962001.1	See Comparison
LR961985.1	See Comparison
LR961968.1	See Comparison
LR961964.1	See Comparison
NZ_CP124946.1	See Comparison
NZ_AP026725.1	See Comparison
NZ_CP091910.1	See Comparison
NZ_CP138639.1	See Comparison
LR962707.1	See Comparison
LR962689.1	See Comparison
LR962675.1	See Comparison
LR962668.1	See Comparison
CP118059.1	See Comparison
NZ_CP110078.1	See Comparison
NZ_CP110045.1	See Comparison
NZ_CP091239.1	See Comparison
NZ_CP085299.1	See Comparison
NZ_CP124897.1	See Comparison
NZ_CP139123.1	See Comparison
NZ_MF807213.1	See Comparison
CP118059.1	See Comparison
LR962707.1	See Comparison
LR962689.1	See Comparison
LR962675.1	See Comparison
LR962668.1	See Comparison
LR962662.1	See Comparison
LR962624.1	See Comparison
LR962515.1	See Comparison
LR962511.1	See Comparison
LR962385.1	See Comparison
LR962366.1	See Comparison
LR962339.1	See Comparison
LR962322.1	See Comparison
LR962291.1	See Comparison
LR962246.1	See Comparison
LR962222.1	See Comparison
LR962209.1	See Comparison
LR962184.1	See Comparison
LR962136.1	See Comparison
LR962106.1	See Comparison
LR962100.1	See Comparison
LR962066.1	See Comparison
LR962048.1	See Comparison
LR962001.1	See Comparison
LR961985.1	See Comparison
LR961968.1	See Comparison
LR961964.1	See Comparison
NZ_CP110078.1	See Comparison
NZ_AP026725.1	See Comparison
NZ_CP110045.1	See Comparison
NZ_CP091239.1	See Comparison
NZ_CP139123.1	See Comparison
NZ_CP091910.1	See Comparison
NZ_MF807213.1	See Comparison
LR962339.1	See Comparison
LR962322.1	See Comparison
LR962291.1	See Comparison
LR962246.1	See Comparison
LR962222.1	See Comparison
LR962209.1	See Comparison
LR962184.1	See Comparison
LR962136.1	See Comparison
LR962106.1	See Comparison
LR962100.1	See Comparison
LR962066.1	See Comparison
LR962048.1	See Comparison
LR962001.1	See Comparison
LR961985.1	See Comparison
LR961968.1	See Comparison
LR961964.1	See Comparison
CP118059.1	See Comparison
NZ_CP110078.1	See Comparison
NZ_CP110045.1	See Comparison
NZ_CP091239.1	See Comparison
NZ_CP091910.1	See Comparison
NZ_CP085299.1	See Comparison
NZ_CP085299.1	See Comparison
NZ_CP138639.1	See Comparison
NZ_CP124946.1	See Comparison
NZ_CP124897.1	See Comparison
NZ_CP139123.1	See Comparison
LR962707.1	See Comparison
LR962689.1	See Comparison
LR962675.1	See Comparison
LR962668.1	See Comparison
LR962662.1	See Comparison
LR962624.1	See Comparison
LR962515.1	See Comparison
LR962511.1	See Comparison
LR962385.1	See Comparison
LR962366.1	See Comparison
NZ_AP026725.1	See Comparison
NZ_CP138639.1	See Comparison
NZ_CP124946.1	See Comparison
NZ_CP124897.1	See Comparison
NZ_AP026725.1	See Comparison
NZ_MF807213.1	See Comparison
LR962246.1	See Comparison
LR962222.1	See Comparison
LR962209.1	See Comparison
LR962184.1	See Comparison
LR962136.1	See Comparison
LR962106.1	See Comparison
LR962100.1	See Comparison
LR962066.1	See Comparison
LR962048.1	See Comparison
LR962001.1	See Comparison
LR961985.1	See Comparison
LR961968.1	See Comparison
LR961964.1	See Comparison
CP118059.1	See Comparison
LR962707.1	See Comparison
LR962689.1	See Comparison
LR962675.1	See Comparison
LR962668.1	See Comparison
LR962662.1	See Comparison
LR962624.1	See Comparison
LR962515.1	See Comparison
LR962511.1	See Comparison
LR962385.1	See Comparison
LR962366.1	See Comparison
LR962339.1	See Comparison
LR962322.1	See Comparison
LR962291.1	See Comparison
NZ_CP138639.1	See Comparison
NZ_CP091239.1	See Comparison
NZ_CP091910.1	See Comparison
NZ_CP110078.1	See Comparison
NZ_CP110045.1	See Comparison
NZ_CP085299.1	See Comparison
NZ_CP128462.1	See Comparison
NZ_CP139123.1	See Comparison
NZ_CP124946.1	See Comparison
NZ_CP124897.1	See Comparison
LR962246.1	See Comparison
NZ_MF807213.1	See Comparison
LR962222.1	See Comparison
LR962209.1	See Comparison
LR962184.1	See Comparison
LR962136.1	See Comparison
LR962106.1	See Comparison
LR962100.1	See Comparison
LR962066.1	See Comparison
LR962048.1	See Comparison
LR962001.1	See Comparison
LR961985.1	See Comparison
LR961968.1	See Comparison
LR961964.1	See Comparison
CP118059.1	See Comparison
LR962707.1	See Comparison
LR962689.1	See Comparison
LR962675.1	See Comparison
LR962668.1	See Comparison
LR962662.1	See Comparison
LR962624.1	See Comparison
LR962515.1	See Comparison
LR962511.1	See Comparison
LR962385.1	See Comparison
LR962366.1	See Comparison
LR962339.1	See Comparison
LR962322.1	See Comparison
LR962291.1	See Comparison
NZ_CP091239.1	See Comparison
NZ_CP110078.1	See Comparison
NZ_CP110045.1	See Comparison
NZ_AP026725.1	See Comparison
NZ_MF807213.1	See Comparison
NZ_CP085299.1	See Comparison
NZ_CP138639.1	See Comparison
NZ_CP124897.1	See Comparison
NZ_CP139123.1	See Comparison
NZ_CP091910.1	See Comparison
NZ_CP124946.1	See Comparison
LR962707.1	See Comparison
LR962689.1	See Comparison
LR962675.1	See Comparison
LR962668.1	See Comparison
LR962662.1	See Comparison
LR962624.1	See Comparison
LR962515.1	See Comparison
LR962511.1	See Comparison
LR962385.1	See Comparison
LR962366.1	See Comparison
LR962339.1	See Comparison
LR962322.1	See Comparison
LR962291.1	See Comparison
LR962246.1	See Comparison
LR962222.1	See Comparison
LR962209.1	See Comparison
LR962184.1	See Comparison
LR962136.1	See Comparison
LR962106.1	See Comparison
LR962100.1	See Comparison
LR962066.1	See Comparison
LR962048.1	See Comparison
LR962001.1	See Comparison
LR961985.1	See Comparison
LR961968.1	See Comparison
LR961964.1	See Comparison
NZ_AP026725.1	See Comparison
CP118059.1	See Comparison
NZ_CP091239.1	See Comparison
NZ_CP110045.1	See Comparison
NZ_CP110078.1	See Comparison
NZ_CP085299.1	See Comparison
NZ_CP091910.1	See Comparison
NZ_CP124946.1	See Comparison
NZ_CP138639.1	See Comparison
NZ_CP124897.1	See Comparison
NZ_CP139123.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2