Plasmid NZ_CP126855.1
Sequence
Nucleotide Information
| Accession | NZ_CP126855.1 |
|---|---|
| Description | Enterobacter hormaechei strain Ehh_7 plasmid pEh7_4, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 6075 bp |
| GC Content | 0.49 % |
| Created at NCBI | Sept. 12, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Enterobacter hormaechei (158836) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Enterobacter (547) |
| Species | Enterobacter_hormaechei (158836) |
| Strain |
Biosample
Curated Collection Information
| Accession | 35394390 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Switzerland |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 46.80/8.23 |
| Address | Switzerland |
ECOSYSTEM
| Original Query | Homo sapiens,isolated bacterial culture,urine |
|---|---|
| Classification | cell_culture,host_associated,urinary_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | replication initiation protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | MobA/MobL family protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | colicin E7 | copy | ||
| PGAG | bacteriocin immunity protein | copy | ||
| PGAG | colicin release lysis protein | copy | ||
| Antismash | RiPP-like | copy | ||
| MOB-typer | Col156 | copy | ||
| MOB-typer | MOBQ | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 10 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| NZ_CP126855.1 | Col156 | MOBQ | mobilizable | AA979 | AJ481 | Enterobacteriaceae | 0.00123693 | genus | ||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
Showing 1 to 1 of 1 entry (filtered from 72,556 total entries)
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | CP001126_00001 | Col156 | 1 | 776 | plus | 96.139 | 83 | 0 | 1267 |
| relaxase | NC_019783_00003 | MOBQ | 1694 | 2617 | plus | 96.104 | 100 | 0 | 615 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| NZ_CP126855.1 | Col156 | 99.35 | 100.0 | 511 | 664 | plus | Enterobacteriales | enterobacteriales |
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
Showing 1 to 1 of 1 entry (filtered from 60,619 total entries)