Plasmid NZ_CP126820.1
Sequence
Nucleotide Information
| Accession | NZ_CP126820.1 |
|---|---|
| Description | Enterobacter hormaechei strain 22KM0641 plasmid pKM41_1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 249398 bp |
| GC Content | 0.46 % |
| Created at NCBI | Aug. 25, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Enterobacter hormaechei (158836) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Enterobacter (547) |
| Species | Enterobacter_hormaechei (158836) |
| Strain |
Biosample
Curated Collection Information
| Accession | 35394400 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Switzerland |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 46.80/8.23 |
| Address | Switzerland |
ECOSYSTEM
| Original Query | Cat,isolated bacterial culture,urine |
|---|---|
| Classification | cell_culture,host_associated,urinary_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | catA2 | copy | ||
| rgi | aadA2 | copy | ||
| rgi | catII from Escherichia coli K-12 | copy | ||
| rgi | Brucella suis mprF | copy | ||
| amrfinderplus | qacEdelta1 | copy | ||
| amrfinderplus | pcoS | copy | ||
| amrfinderplus | qnrA1 | copy | ||
| amrfinderplus | merT | copy | ||
| amrfinderplus | mcr-9.1 | copy | ||
| amrfinderplus | merE | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 274 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | NC_017500 | MOBH | 153203 | 153793 | minus | 100 | 100 | 0 | 1092 |
| replicon | BX664015 | IncHI2A | 211 | 840 | plus | 100 | 100 | 0 | 1164 |
| replicon | 000340__KU353730 | rep_cluster_1088 | 56959 | 57921 | plus | 98.546 | 100 | 0 | 1701 |
| relaxase | NC_012555_00231 | MOBH | 146756 | 149899 | minus | 100 | 100 | 0 | 2135 |
| mate-pair-formation | NC_005211_00005 | MPF_F | 2758 | 3543 | plus | 100 | 100 | 2.33e-172 | 533 |
| mate-pair-formation | NC_009838_00006 | MPF_F | 3546 | 4814 | plus | 99.527 | 100 | 0 | 800 |
| mate-pair-formation | NC_005211_00012 | MPF_T | 8955 | 11633 | plus | 100 | 100 | 0 | 1873 |
| mate-pair-formation | NC_021845_00017 | MPF_F | 30622 | 32130 | plus | 99.602 | 100 | 0 | 997 |
| mate-pair-formation | NC_005211_00030 | MPF_F | 32272 | 33330 | plus | 100 | 100 | 0 | 737 |
| mate-pair-formation | NC_005211_00207 | MPF_F | 144672 | 146753 | minus | 100 | 100 | 0 | 1423 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 11 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |