Plasmid NZ_CP126537.1

Sequence

Nucleotide Information

Accession NZ_CP126537.1
Description Citrobacter freundii strain CRNMS1 plasmid pblaNDM5-S1, complete sequence
Source refseq
Topology circular
Length 197210 bp
GC Content 0.51 %
Created at NCBI June 7, 2023



Assembly

Genome Data Information

Accession GCF_030177735.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 35332011

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.3N;120.2E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.30/120.20
Address 杭州濮家小学教育集团(笕新校区), 全福桥路, 池塘庙, Jianqiao, Shangcheng District, Hangzhou City, Zhejiang, 310017, China

ECOSYSTEM
Original Query Homo sapiens,Patients
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplussul2copy
rgidfrA17copy
amrfinderplusaadA5copy
amrfinderplusblecopy
amrfinderplussul1copy
amrfinderplusblaNDM-5copy
amrfinderplusfloRcopy
amrfinderplusdfrA17copy
amrfinderplusqacEdelta1copy
amrfinderplusqnrA1copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 246 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_007682_00044MPF_T2622626555plus100814.03e-67230
mate-pair-formationNC_008612_00190MPF_T2656927450plus1001001.21e-176547
mate-pair-formationNC_009140_00071MPF_F6473766599minus10010001177
mate-pair-formationNC_016976_00061MPF_T8496685427minus88.4621005.9500000000000005e-80280
mate-pair-formationNC_023277_00163MPF_T125436127586plus90.09810001335
mate-pair-formationNC_019157_00029MPF_T128648129700plus1001000645
mate-pair-formationNC_019157_00030MPF_T129898130623plus1001001.22e-145456
mate-pair-formationNC_019083_00030MPF_T130632131558plus98.7061000630
mate-pair-formationNC_017624_00009MPF_T134005135801plus95.1599801123
mate-pair-formationNC_012885_00167MPF_F185974187404plus97.4841000931
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2