Plasmid NZ_CP124940.1

Sequence

Nucleotide Information

Accession NZ_CP124940.1
Description Enterococcus faecalis strain EfsC129 plasmid p1_EfsC129_rep9b, complete sequence
Source refseq
Topology circular
Length 68767 bp
GC Content 0.34 %
Created at NCBI June 5, 2023



Assembly

Genome Data Information

Accession GCF_030517415.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 33741211

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 32.77N;96.79W
Original Query Type coordinates
Coordinates (Lat/Lon) 32.77/-96.79
Address 1611, Browder Street, Dallas, Dallas County, Texas, 75215, United States

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Sex female

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP124951.1 See Comparison
NZ_CP124940.1 See Comparison
NZ_CP124936.1 See Comparison
NZ_CP124926.1 See Comparison
NZ_CP124961.1 See Comparison
NZ_CP124899.1 See Comparison
CP156023.1 See Comparison
LR962397.1 See Comparison
LR962317.1 See Comparison
LR962218.1 See Comparison
NZ_CP124951.1 See Comparison
NZ_CP136359.1 See Comparison
CP110024.1 See Comparison
NZ_CP091909.1 See Comparison
NZ_CP091885.1 See Comparison
NZ_CP091887.1 See Comparison
NZ_CP124936.1 See Comparison
NZ_CP124926.1 See Comparison
NZ_CP124961.1 See Comparison
CP110024.1 See Comparison
CP156023.1 See Comparison
LR962397.1 See Comparison
LR962317.1 See Comparison
LR962218.1 See Comparison
NZ_CP124899.1 See Comparison
NZ_CP091885.1 See Comparison
NZ_CP091909.1 See Comparison
NZ_CP091887.1 See Comparison
CP156023.1 See Comparison
NZ_CP136359.1 See Comparison
NZ_CP124899.1 See Comparison
NZ_CP124951.1 See Comparison
NZ_CP124936.1 See Comparison
NZ_CP124926.1 See Comparison
NZ_CP124961.1 See Comparison
LR962397.1 See Comparison
LR962317.1 See Comparison
LR962218.1 See Comparison
NZ_CP091909.1 See Comparison
CP110024.1 See Comparison
NZ_CP124951.1 See Comparison
NZ_CP091885.1 See Comparison
NZ_CP091887.1 See Comparison
NZ_CP136359.1 See Comparison
NZ_CP124936.1 See Comparison
NZ_CP124926.1 See Comparison
NZ_CP124961.1 See Comparison
CP156023.1 See Comparison
NZ_CP124899.1 See Comparison
NZ_CP091885.1 See Comparison
CP110024.1 See Comparison
LR962397.1 See Comparison
LR962317.1 See Comparison
LR962218.1 See Comparison
NZ_CP091909.1 See Comparison
NZ_CP091887.1 See Comparison
LR962397.1 See Comparison
NZ_CP136359.1 See Comparison
NZ_CP124899.1 See Comparison
NZ_CP124951.1 See Comparison
NZ_CP124936.1 See Comparison
NZ_CP124926.1 See Comparison
NZ_CP124961.1 See Comparison
CP156023.1 See Comparison
LR962317.1 See Comparison
LR962218.1 See Comparison
NZ_CP091885.1 See Comparison
NZ_CP091909.1 See Comparison
CP110024.1 See Comparison
NZ_CP091887.1 See Comparison
NZ_CP136359.1 See Comparison
NZ_CP124951.1 See Comparison
NZ_CP124936.1 See Comparison
NZ_CP124926.1 See Comparison
NZ_CP124961.1 See Comparison
CP156023.1 See Comparison
NZ_CP124899.1 See Comparison
NZ_CP091909.1 See Comparison
LR962397.1 See Comparison
LR962317.1 See Comparison
LR962218.1 See Comparison
CP110024.1 See Comparison
NZ_CP136359.1 See Comparison
NZ_CP091885.1 See Comparison
NZ_CP091887.1 See Comparison
NZ_CP091909.1 See Comparison
NZ_CP124899.1 See Comparison
LR962397.1 See Comparison
LR962317.1 See Comparison
LR962218.1 See Comparison
NZ_CP124951.1 See Comparison
NZ_CP124936.1 See Comparison
NZ_CP124926.1 See Comparison
NZ_CP124961.1 See Comparison
CP156023.1 See Comparison
CP110024.1 See Comparison
NZ_CP091885.1 See Comparison
NZ_CP091887.1 See Comparison
NZ_CP136359.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2