Plasmid NZ_CP124876.1

Sequence

Nucleotide Information

Accession NZ_CP124876.1
Description Klebsiella pneumoniae strain K82 plasmid p3, complete sequence
Source refseq
Topology circular
Length 32954 bp
GC Content 0.34 %
Created at NCBI May 17, 2023



Assembly

Genome Data Information

Accession GCF_030020895.1
Assembly Coverage 120


Biosample

Curated Collection Information
Accession 34578016

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 29.868388N;121.549792E
Original Query Type coordinates
Coordinates (Lat/Lon) 29.87/121.55
Address Warmjoy Coffee, 76, 碶闸街, Jiangsha, Haishu District, Ningbo, Zhejiang, 315000, China

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bladder cancer
DOID/SYMP
  • Bladder carcinoma (DOID:4007 )
    • A urinary bladder cancer that has_material_basis_in abnormally proliferating cells derives_from epithelial cells.
    • Derives_from: ['epithelial cells']
    • Has_material_basis_in: ['abnormally proliferating cells derives_from epithelial cells']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP124876.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore