Plasmid NZ_CP124237.1

Sequence

Nucleotide Information

Accession NZ_CP124237.1
Description Salmonella enterica strain S151 plasmid unnamed, complete sequence
Source refseq
Topology circular
Length 49599 bp
GC Content 0.52 %
Created at NCBI April 5, 2024



Assembly

Genome Data Information

Accession GCF_037055435.1
Assembly Coverage 204


Biosample

Curated Collection Information
Accession 34359772

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Germany,Schoenwerder
Original Query Type name
Coordinates (Lat/Lon) 53.37/13.84
Address Germany,Schoenwerder

ECOSYSTEM
Original Query Nyctereutes procyonoides,whole organism,intestine
Classification gastrointestinal_system,host_associated
Host-associated Taxon
  • Nyctereutes procyonoides (34880)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP012345.2 See Comparison
NC_002638.1 See Comparison
NZ_CP133285.1 See Comparison
NZ_CP149508.1 See Comparison
NZ_CP051367.1 See Comparison
NZ_CP088135.1 See Comparison
NZ_CP110933.1 See Comparison
NZ_CP110935.1 See Comparison
NZ_CP117977.1 See Comparison
NC_006855.1 See Comparison
CP075032.1 See Comparison
CP075025.1 See Comparison
NZ_CP051367.1 See Comparison
NZ_CP012345.2 See Comparison
NZ_CP149508.1 See Comparison
NC_002638.1 See Comparison
NZ_CP133285.1 See Comparison
CP075032.1 See Comparison
NZ_CP117977.1 See Comparison
NZ_CP110933.1 See Comparison
NZ_CP110935.1 See Comparison
NZ_CP088135.1 See Comparison
CP075025.1 See Comparison
NZ_CP012345.2 See Comparison
NC_006855.1 See Comparison
NZ_CP133285.1 See Comparison
NC_002638.1 See Comparison
NZ_CP149508.1 See Comparison
NZ_CP117977.1 See Comparison
NZ_CP051367.1 See Comparison
CP075032.1 See Comparison
NZ_CP088135.1 See Comparison
NZ_CP110933.1 See Comparison
NZ_CP110935.1 See Comparison
CP075025.1 See Comparison
NZ_CP012345.2 See Comparison
NC_006855.1 See Comparison
NZ_CP051367.1 See Comparison
NZ_CP133285.1 See Comparison
NZ_CP149508.1 See Comparison
NC_002638.1 See Comparison
NZ_CP088135.1 See Comparison
NZ_CP110933.1 See Comparison
NZ_CP110935.1 See Comparison
NZ_CP117977.1 See Comparison
NC_006855.1 See Comparison
CP075032.1 See Comparison
CP075025.1 See Comparison
NZ_CP051367.1 See Comparison
NC_002638.1 See Comparison
NZ_CP012345.2 See Comparison
NZ_CP133285.1 See Comparison
NZ_CP149508.1 See Comparison
CP075032.1 See Comparison
NZ_CP088135.1 See Comparison
NZ_CP117977.1 See Comparison
NZ_CP110933.1 See Comparison
NZ_CP110935.1 See Comparison
CP075025.1 See Comparison
NZ_CP012345.2 See Comparison
NC_006855.1 See Comparison
NZ_CP149508.1 See Comparison
NZ_CP133285.1 See Comparison
NC_002638.1 See Comparison
NZ_CP088135.1 See Comparison
NZ_CP110933.1 See Comparison
NZ_CP110935.1 See Comparison
NZ_CP051367.1 See Comparison
NZ_CP117977.1 See Comparison
CP075032.1 See Comparison
CP075025.1 See Comparison
NZ_CP012345.2 See Comparison
NC_006855.1 See Comparison
NZ_CP149508.1 See Comparison
NZ_CP133285.1 See Comparison
NC_002638.1 See Comparison
CP075032.1 See Comparison
NZ_CP051367.1 See Comparison
NZ_CP117977.1 See Comparison
NZ_CP088135.1 See Comparison
CP075025.1 See Comparison
NZ_CP124237.1 See Comparison
NZ_CP110933.1 See Comparison
NZ_CP110935.1 See Comparison
NC_006855.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2