Plasmid NZ_CP122683.1

Sequence

Nucleotide Information

Accession NZ_CP122683.1
Description Escherichia coli strain ETEC4068 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 55377 bp
GC Content 0.45 %
Created at NCBI May 17, 2023



Assembly

Genome Data Information

Accession GCF_030013365.1
Assembly Coverage 163


Biosample

Curated Collection Information
Accession 32549645

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Belgium
Original Query Type name
Coordinates (Lat/Lon) 50.64/4.67
Address Belgium

ECOSYSTEM
Original Query Sus scrofa,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query enteric colibacillosis
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusfedAcopy
amrfinderplusfedFcopy
amrfinderplushlyA-alphacopy
PGAGdivision plane positioning ATPase MipZcopy
PGAGhypothetical proteincopy
PGAGDUF6685 family proteincopy
PGAGddp1copy
PGAGhypothetical proteincopy
PGAGRepB family plasmid replication initiator proteincopy
PGAGplasmid stabilization proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 48 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000215__KC853434_00019IncX125342980minus98.211000782
replicon000136__AP014877_00014IncFIA2688927746minus97.90210001485
repliconCR942285IncFIC2774428005plus96.9471003.87e-121440
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 3 of 3 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2