Plasmid NZ_CP122592.1

Sequence

Nucleotide Information

Accession NZ_CP122592.1
Description Escherichia coli strain ETEC6335 plasmid unnamed4, complete sequence
Source refseq
Topology circular
Length 120805 bp
GC Content 0.49 %
Created at NCBI May 17, 2023



Assembly

Genome Data Information

Accession GCF_030013005.1
Assembly Coverage 260


Biosample

Curated Collection Information
Accession 32549676

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Netherlands
Original Query Type name
Coordinates (Lat/Lon) 52.24/5.53
Address Netherlands

ECOSYSTEM
Original Query Sus scrofa,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query enteric colibacillosis
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP122592.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplushlyA-alphacopy
amrfinderplussta1copy
amrfinderplusfedAcopy
amrfinderplusfedFcopy
PGAGtoll/interleukin-1 receptor domain-containing proteincopy
PGAGplasmid segregation protein ParMcopy
PGAGDUF1281 domain-containing proteincopy
PGAGDNA methylasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 143 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
Loading...
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_017627_00068MOBF5020355470plus96.24110003306
mate-pair-formationNC_022651_00077MPF_F2486125169plus100991.84e-63213
mate-pair-formationNC_010409_00124MPF_F2574726472plus98.761004.19e-156486
mate-pair-formationNC_019094_00090MPF_F2647527869plus96.137960815
mate-pair-formationNC_017639_00094MPF_F2902729539plus97.6611006.21e-99318
mate-pair-formationNC_013437_00116MPF_T3005832679plus90.7329901642
mate-pair-formationNC_007675_00027MPF_F3306533694plus100971.19e-136429
mate-pair-formationNC_017639_00100MPF_F3369434650plus99.06910607
mate-pair-formationNC_018966_00040MPF_F3573436318plus96.923921.2000000000000002e-123391
mate-pair-formationNC_019094_00068MPF_F3631838165plus92.85710001131
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2