Plasmid NZ_CP122464.1

Sequence

Nucleotide Information

Accession NZ_CP122464.1
Description Klebsiella pneumoniae subsp. pneumoniae strain IITJ_U23 plasmid pU23_IncFIBpKPHS1, complete sequence
Source refseq
Topology circular
Length 112541 bp
GC Content 0.49 %
Created at NCBI April 23, 2023



Assembly

Genome Data Information

Accession GCF_029834625.1
Assembly Coverage 166


Biosample

Curated Collection Information
Accession 34035886

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query India,Jodhpur
Original Query Type name
Coordinates (Lat/Lon) 26.30/73.04
Address India,Jodhpur

ECOSYSTEM
Original Query Homo sapiens,Whole organism,Urine,Urine of ICU admitted patient
Classification disease,host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP122464.1 See Comparison
NZ_CP122471.1 See Comparison
CP040447.1 See Comparison
CP052390.1 See Comparison
NZ_CP070439.1 See Comparison
NZ_CP080358.1 See Comparison
NZ_CP016924.1 See Comparison
NZ_CP122471.1 See Comparison
NZ_CP012570.1 See Comparison
NZ_CP012565.1 See Comparison
NZ_CP032187.1 See Comparison
CP052390.1 See Comparison
CP040447.1 See Comparison
NZ_CP080358.1 See Comparison
NZ_CP070439.1 See Comparison
NZ_CP016924.1 See Comparison
NZ_CP122471.1 See Comparison
NZ_CP012570.1 See Comparison
NZ_CP012565.1 See Comparison
NZ_CP032187.1 See Comparison
CP040447.1 See Comparison
CP052390.1 See Comparison
NZ_CP080358.1 See Comparison
NZ_CP070439.1 See Comparison
CP052390.1 See Comparison
NZ_CP016924.1 See Comparison
NZ_CP032187.1 See Comparison
NZ_CP122471.1 See Comparison
NZ_CP012570.1 See Comparison
NZ_CP012565.1 See Comparison
CP040447.1 See Comparison
NZ_CP012570.1 See Comparison
NZ_CP070439.1 See Comparison
NZ_CP080358.1 See Comparison
NZ_CP012565.1 See Comparison
NZ_CP070439.1 See Comparison
NZ_CP032187.1 See Comparison
NZ_CP016924.1 See Comparison
NZ_CP122471.1 See Comparison
CP040447.1 See Comparison
CP052390.1 See Comparison
NZ_CP012570.1 See Comparison
NZ_CP080358.1 See Comparison
NZ_CP016924.1 See Comparison
NZ_CP012565.1 See Comparison
NZ_CP070439.1 See Comparison
NZ_CP122471.1 See Comparison
CP040447.1 See Comparison
CP052390.1 See Comparison
NZ_CP032187.1 See Comparison
NZ_CP012570.1 See Comparison
NZ_CP080358.1 See Comparison
NZ_CP012565.1 See Comparison
NZ_CP032187.1 See Comparison
NZ_CP016924.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore