Plasmid NZ_CP122387.1

Sequence

Nucleotide Information

Accession NZ_CP122387.1
Description Klebsiella pneumoniae subsp. pneumoniae strain KPN-68 plasmid p6, complete sequence
Source refseq
Topology circular
Length 2095 bp
GC Content 0.45 %
Created at NCBI July 7, 2023



Assembly

Genome Data Information

Accession GCF_030388445.1
Assembly Coverage 30


Biosample

Curated Collection Information
Accession 34122257

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 24.20168402N;55.67599108E
Original Query Type coordinates
Coordinates (Lat/Lon) 24.20/55.68
Address Khalifa Bin Zayed Street, 'Asharij, Asharej, Al Ain, Abu Dhabi Emirate, United Arab Emirates

ECOSYSTEM
Original Query Homo sapiens,clinical
Classification anthropogenic,hospital,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Respiratory tract infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']
  • Respiratory system disease (DOID:1579 )
    • A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP071284.1 See Comparison
NZ_CP115711.1 See Comparison
NZ_CP083937.1 See Comparison
NZ_CP103507.1 See Comparison
NZ_CP079680.1 See Comparison
NZ_CP097236.1 See Comparison
NZ_CP097231.1 See Comparison
NZ_CP097242.1 See Comparison
NZ_CP097227.1 See Comparison
NZ_CP097222.1 See Comparison
NZ_CP079170.1 See Comparison
NZ_CP079605.1 See Comparison
NZ_CP115711.1 See Comparison
NZ_CP071284.1 See Comparison
NZ_CP079680.1 See Comparison
NZ_CP083937.1 See Comparison
NZ_CP103507.1 See Comparison
NZ_CP097236.1 See Comparison
NZ_CP097231.1 See Comparison
NZ_CP097242.1 See Comparison
NZ_CP097227.1 See Comparison
NZ_CP097222.1 See Comparison
NZ_CP079170.1 See Comparison
NZ_CP079605.1 See Comparison
NZ_CP103507.1 See Comparison
NZ_CP071284.1 See Comparison
NZ_CP115711.1 See Comparison
NZ_CP083937.1 See Comparison
NZ_CP079680.1 See Comparison
NZ_CP097236.1 See Comparison
NZ_CP097231.1 See Comparison
NZ_CP097242.1 See Comparison
NZ_CP097227.1 See Comparison
NZ_CP097222.1 See Comparison
NZ_CP079170.1 See Comparison
NZ_CP079605.1 See Comparison
NZ_CP071284.1 See Comparison
NZ_CP083937.1 See Comparison
NZ_CP115711.1 See Comparison
NZ_CP079170.1 See Comparison
NZ_CP097236.1 See Comparison
NZ_CP097231.1 See Comparison
NZ_CP097242.1 See Comparison
NZ_CP097227.1 See Comparison
NZ_CP097222.1 See Comparison
NZ_CP103507.1 See Comparison
NZ_CP079605.1 See Comparison
NZ_CP079680.1 See Comparison
NZ_CP115711.1 See Comparison
NZ_CP071284.1 See Comparison
NZ_CP103507.1 See Comparison
NZ_CP083937.1 See Comparison
NZ_CP097236.1 See Comparison
NZ_CP097231.1 See Comparison
NZ_CP097242.1 See Comparison
NZ_CP097227.1 See Comparison
NZ_CP097222.1 See Comparison
NZ_CP079605.1 See Comparison
NZ_CP079680.1 See Comparison
NZ_CP083937.1 See Comparison
NZ_CP079170.1 See Comparison
NZ_CP071284.1 See Comparison
NZ_CP115711.1 See Comparison
NZ_CP122387.1 See Comparison
NZ_CP079605.1 See Comparison
NZ_CP097236.1 See Comparison
NZ_CP097231.1 See Comparison
NZ_CP097242.1 See Comparison
NZ_CP097227.1 See Comparison
NZ_CP097222.1 See Comparison
NZ_CP079680.1 See Comparison
NZ_CP079170.1 See Comparison
NZ_CP103507.1 See Comparison
NZ_CP103507.1 See Comparison
NZ_CP071284.1 See Comparison
NZ_CP115711.1 See Comparison
NZ_CP083937.1 See Comparison
NZ_CP079605.1 See Comparison
NZ_CP097227.1 See Comparison
NZ_CP097222.1 See Comparison
NZ_CP097236.1 See Comparison
NZ_CP097231.1 See Comparison
NZ_CP097242.1 See Comparison
NZ_CP079680.1 See Comparison
NZ_CP079170.1 See Comparison


Identical Plasmids

100% Sequence Identity


  • Sequence
    • Accession: NZ_CP079605.1
    • Description: Klebsiella pneumoniae subsp. pneumoniae strain WRC10_CMC309MC plasmid pCMC309M_P6, complete sequence
    • Source: refseq
    • Created at NCBI: July 27, 2021

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (72407)
  • Biosample
    Accession: 20115188
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9165N;79.1325E
    • Original Query Type: coordinates
    • Address: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,Endotracheal aspirate
    • Classification: host_associated,respiratory_system,trachea
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Pneumoniae
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP079170.1
    • Description: Klebsiella pneumoniae subsp. pneumoniae strain WRC09_CMC309PC plasmid pCMC309P_P6, complete sequence
    • Source: refseq
    • Created at NCBI: July 22, 2021

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (72407)
  • Biosample
    Accession: 20115187
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9165N;79.1325E
    • Original Query Type: coordinates
    • Address: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,Endotracheal aspirate
    • Classification: host_associated,respiratory_system,trachea
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Pneumoniae
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2