Plasmid NZ_CP120156.1

Sequence

Nucleotide Information

Accession NZ_CP120156.1
Description Mammaliicoccus lentus strain Dog026 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 26532 bp
GC Content 0.31 %
Created at NCBI Jan. 6, 2024



Assembly

Genome Data Information

Accession GCF_034042815.1
Assembly Coverage 283


Biosample

Curated Collection Information

Accession 33696772

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 1.3345S;36.7331E
Original Query Type coordinates
Coordinates (Lat/Lon) -1.33/36.73
Address Hillcrest Elementary School, Hillcrest Road, Karen C, Karen ward, Lang'ata, Nairobi, Nairobi County, Nairobi, 00517, Kenya

ECOSYSTEM
Original Query Canis lupus familiaris,cell culture,nostril,nasal swab
Classification cell_culture,host_associated,nasal,respiratory_system
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query None
DOID/SYMP

Visualization




Similar Plasmids

based on Mash distance


Plasmid Visualization


SourceElement Name Display Sequence Favorite
amrfinderplustet(K)copy
PGAGhypothetical proteincopy
PGAG2,3-butanediol dehydrogenasecopy
PGAGrecombinase family proteincopy
PGAGSIR2 family proteincopy
PGAGTIR domain-containing proteincopy
PGAGtoll/interleukin-1 receptor domain-containing proteincopy
PGAGrestriction endonuclease subunit Scopy
PGAGtype I restriction-modification system subunit Mcopy
PGAGrestriction endonuclease subunit Scopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 24 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000379__NC_013452_00003rep_cluster_11182126422130minus1009201602
relaxaseNC_001391_00002MOBV1904219536minus95.152921.28e-102329
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 2 of 2 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2