Plasmid NZ_CP120156.1
Sequence
Nucleotide Information
Accession | NZ_CP120156.1 |
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Description | Mammaliicoccus lentus strain Dog026 plasmid unnamed1, complete sequence |
Source | refseq |
Topology | circular |
Length | 26532 bp |
GC Content | 0.31 % |
Created at NCBI | Jan. 6, 2024 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Mammaliicoccus lentus (42858) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Bacillota (1239) |
Class | Bacilli (91061) |
Order | Bacillales (1385) |
Family | Staphylococcaceae (90964) |
Genus | Mammaliicoccus (2803850) |
Species | Mammaliicoccus_lentus (42858) |
Strain |
Biosample
Curated Collection Information
Accession | 33696772 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | 1.3345S;36.7331E |
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Original Query Type | coordinates |
Coordinates (Lat/Lon) | -1.33/36.73 |
Address | Hillcrest Elementary School, Hillcrest Road, Karen C, Karen ward, Lang'ata, Nairobi, Nairobi County, Nairobi, 00517, Kenya |
ECOSYSTEM
Original Query | Canis lupus familiaris,cell culture,nostril,nasal swab |
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Classification | cell_culture,host_associated,nasal,respiratory_system |
Host-associated Taxon |
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DISEASE
Original Query | None |
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DOID/SYMP |
Visualization
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
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amrfinderplus | tet(K) | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | 2,3-butanediol dehydrogenase | copy | ||
PGAG | recombinase family protein | copy | ||
PGAG | SIR2 family protein | copy | ||
PGAG | TIR domain-containing protein | copy | ||
PGAG | toll/interleukin-1 receptor domain-containing protein | copy | ||
PGAG | restriction endonuclease subunit S | copy | ||
PGAG | type I restriction-modification system subunit M | copy | ||
PGAG | restriction endonuclease subunit S | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 24 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
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NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
---|---|---|---|---|---|---|---|---|---|---|
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
replicon | 000379__NC_013452_00003 | rep_cluster_1118 | 21264 | 22130 | minus | 100 | 92 | 0 | 1602 |
relaxase | NC_001391_00002 | MOBV | 19042 | 19536 | minus | 95.152 | 92 | 1.28e-102 | 329 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
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NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |