Plasmid NZ_CP120116.1

Sequence

Nucleotide Information

Accession NZ_CP120116.1
Description Staphylococcus aureus strain Dog101 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 33706 bp
GC Content 0.28 %
Created at NCBI Jan. 6, 2024



Assembly

Genome Data Information

Accession GCF_034034275.1
Assembly Coverage 302


Biosample

Curated Collection Information
Accession 33696793

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 1.3345S;36.7331E
Original Query Type coordinates
Coordinates (Lat/Lon) -1.33/36.73
Address Hillcrest Elementary School, Hillcrest Road, Karen C, Karen ward, Lang'ata, Nairobi, Nairobi County, Nairobi, 00517, Kenya

ECOSYSTEM
Original Query Canis lupus familiaris,cell culture,nostril,nasal swab
Classification cell_culture,host_associated,nasal,respiratory_system
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP129353.1 See Comparison
NZ_CP129358.1 See Comparison
NZ_CP129353.1 See Comparison
NZ_CP120116.1 See Comparison
NZ_CP120171.1 See Comparison
NZ_CP120126.1 See Comparison
NZ_CP120153.1 See Comparison
NZ_CP120133.1 See Comparison
NZ_CP120163.1 See Comparison
NZ_CP120183.1 See Comparison
NZ_CP120068.1 See Comparison
NZ_CP120045.1 See Comparison
NZ_CP120198.1 See Comparison
NZ_CP120109.1 See Comparison
NZ_CP120054.1 See Comparison
NZ_CP129358.1 See Comparison
NZ_CP120058.1 See Comparison
NZ_CP120144.1 See Comparison
NZ_CP120048.1 See Comparison
NZ_CP120034.1 See Comparison
NZ_CP120071.1 See Comparison
NZ_CP120135.1 See Comparison
NZ_CP120051.1 See Comparison
NZ_CP120202.1 See Comparison
NZ_CP120018.1 See Comparison
NZ_CP120168.1 See Comparison
NZ_CP120097.1 See Comparison
NZ_CP120119.1 See Comparison
NZ_CP120080.1 See Comparison
NZ_CP120112.1 See Comparison
NZ_CP120175.1 See Comparison
NZ_CP120080.1 See Comparison
NZ_CP120112.1 See Comparison
NZ_CP120175.1 See Comparison
NZ_CP120171.1 See Comparison
NZ_CP120058.1 See Comparison
NZ_CP120126.1 See Comparison
NZ_CP120153.1 See Comparison
NZ_CP120144.1 See Comparison
NZ_CP120133.1 See Comparison
NZ_CP120048.1 See Comparison
NZ_CP120034.1 See Comparison
NZ_CP120071.1 See Comparison
NZ_CP120163.1 See Comparison
NZ_CP120183.1 See Comparison
NZ_CP120068.1 See Comparison
NZ_CP120135.1 See Comparison
NZ_CP120045.1 See Comparison
NZ_CP120051.1 See Comparison
NZ_CP120202.1 See Comparison
NZ_CP120198.1 See Comparison
NZ_CP120109.1 See Comparison
NZ_CP120018.1 See Comparison
NZ_CP120168.1 See Comparison
NZ_CP120097.1 See Comparison
NZ_CP120054.1 See Comparison
NZ_CP120119.1 See Comparison
NZ_CP129353.1 See Comparison
NZ_CP129358.1 See Comparison
NZ_CP120171.1 See Comparison
NZ_CP120058.1 See Comparison
NZ_CP120144.1 See Comparison
NZ_CP120048.1 See Comparison
NZ_CP120034.1 See Comparison
NZ_CP120126.1 See Comparison
NZ_CP120071.1 See Comparison
NZ_CP120153.1 See Comparison
NZ_CP120135.1 See Comparison
NZ_CP120051.1 See Comparison
NZ_CP120133.1 See Comparison
NZ_CP120202.1 See Comparison
NZ_CP120018.1 See Comparison
NZ_CP120163.1 See Comparison
NZ_CP120168.1 See Comparison
NZ_CP120183.1 See Comparison
NZ_CP120097.1 See Comparison
NZ_CP120068.1 See Comparison
NZ_CP120119.1 See Comparison
NZ_CP120045.1 See Comparison
NZ_CP120080.1 See Comparison
NZ_CP120198.1 See Comparison
NZ_CP120112.1 See Comparison
NZ_CP120109.1 See Comparison
NZ_CP120175.1 See Comparison
NZ_CP120054.1 See Comparison
NZ_CP120058.1 See Comparison
NZ_CP129353.1 See Comparison
NZ_CP129358.1 See Comparison
NZ_CP120171.1 See Comparison
NZ_CP120126.1 See Comparison
NZ_CP120153.1 See Comparison
NZ_CP120133.1 See Comparison
NZ_CP120163.1 See Comparison
NZ_CP120183.1 See Comparison
NZ_CP120068.1 See Comparison
NZ_CP120045.1 See Comparison
NZ_CP120144.1 See Comparison
NZ_CP120198.1 See Comparison
NZ_CP120109.1 See Comparison
NZ_CP120048.1 See Comparison
NZ_CP120034.1 See Comparison
NZ_CP120071.1 See Comparison
NZ_CP120135.1 See Comparison
NZ_CP120051.1 See Comparison
NZ_CP120202.1 See Comparison
NZ_CP120018.1 See Comparison
NZ_CP120168.1 See Comparison
NZ_CP120097.1 See Comparison
NZ_CP120119.1 See Comparison
NZ_CP120054.1 See Comparison
NZ_CP120080.1 See Comparison
NZ_CP120112.1 See Comparison
NZ_CP120175.1 See Comparison
NZ_CP120058.1 See Comparison
NZ_CP129353.1 See Comparison
NZ_CP129358.1 See Comparison
NZ_CP120144.1 See Comparison
NZ_CP120048.1 See Comparison
NZ_CP120034.1 See Comparison
NZ_CP120153.1 See Comparison
NZ_CP120071.1 See Comparison
NZ_CP120135.1 See Comparison
NZ_CP120133.1 See Comparison
NZ_CP120163.1 See Comparison
NZ_CP120051.1 See Comparison
NZ_CP120202.1 See Comparison
NZ_CP120183.1 See Comparison
NZ_CP120068.1 See Comparison
NZ_CP120018.1 See Comparison
NZ_CP120045.1 See Comparison
NZ_CP120198.1 See Comparison
NZ_CP120168.1 See Comparison
NZ_CP120097.1 See Comparison
NZ_CP120109.1 See Comparison
NZ_CP120119.1 See Comparison
NZ_CP120080.1 See Comparison
NZ_CP120112.1 See Comparison
NZ_CP120175.1 See Comparison
NZ_CP120171.1 See Comparison
NZ_CP120126.1 See Comparison
NZ_CP120045.1 See Comparison
NZ_CP120054.1 See Comparison
NZ_CP129353.1 See Comparison
NZ_CP129358.1 See Comparison
NZ_CP120133.1 See Comparison
NZ_CP120163.1 See Comparison
NZ_CP120183.1 See Comparison
NZ_CP120068.1 See Comparison
NZ_CP120045.1 See Comparison
NZ_CP120198.1 See Comparison
NZ_CP120109.1 See Comparison
NZ_CP120054.1 See Comparison
NZ_CP120058.1 See Comparison
NZ_CP120144.1 See Comparison
NZ_CP120048.1 See Comparison
NZ_CP120034.1 See Comparison
NZ_CP120058.1 See Comparison
NZ_CP120144.1 See Comparison
NZ_CP120048.1 See Comparison
NZ_CP120034.1 See Comparison
NZ_CP120071.1 See Comparison
NZ_CP120135.1 See Comparison
NZ_CP120051.1 See Comparison
NZ_CP120202.1 See Comparison
NZ_CP120018.1 See Comparison
NZ_CP120168.1 See Comparison
NZ_CP120097.1 See Comparison
NZ_CP120119.1 See Comparison
NZ_CP120080.1 See Comparison
NZ_CP120112.1 See Comparison
NZ_CP120175.1 See Comparison
NZ_CP120171.1 See Comparison
NZ_CP120126.1 See Comparison
NZ_CP120153.1 See Comparison
NZ_CP129353.1 See Comparison
NZ_CP129358.1 See Comparison
NZ_CP120071.1 See Comparison
NZ_CP120135.1 See Comparison
NZ_CP120051.1 See Comparison
NZ_CP120202.1 See Comparison
NZ_CP120018.1 See Comparison
NZ_CP120168.1 See Comparison
NZ_CP120198.1 See Comparison
NZ_CP120097.1 See Comparison
NZ_CP120109.1 See Comparison
NZ_CP120119.1 See Comparison
NZ_CP120080.1 See Comparison
NZ_CP120112.1 See Comparison
NZ_CP120054.1 See Comparison
NZ_CP120175.1 See Comparison
NZ_CP120171.1 See Comparison
NZ_CP120126.1 See Comparison
NZ_CP120153.1 See Comparison
NZ_CP120133.1 See Comparison
NZ_CP120163.1 See Comparison
NZ_CP120183.1 See Comparison
NZ_CP120068.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2