Plasmid NZ_CP120042.1
Sequence
Nucleotide Information
| Accession | NZ_CP120042.1 |
|---|---|
| Description | Staphylococcus aureus strain Dog136 plasmid unnamed1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 39161 bp |
| GC Content | 0.31 % |
| Created at NCBI | Jan. 6, 2024 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Staphylococcus aureus (1280) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Bacillota (1239) |
| Class | Bacilli (91061) |
| Order | Bacillales (1385) |
| Family | Staphylococcaceae (90964) |
| Genus | Staphylococcus (1279) |
| Species | Staphylococcus_aureus (1280) |
| Strain |
Biosample
Curated Collection Information
| Accession | 33696821 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 1.3345S;36.7331E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | -1.33/36.73 |
| Address | Hillcrest Elementary School, Hillcrest Road, Karen C, Karen ward, Lang'ata, Nairobi, Nairobi County, Nairobi, 00517, Kenya |
ECOSYSTEM
| Original Query | Canis lupus familiaris,cell culture,nostril,nasal swab |
|---|---|
| Classification | cell_culture,host_associated,nasal,respiratory_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaR1 | copy | ||
| amrfinderplus | blaZ | copy | ||
| amrfinderplus | cadD | copy | ||
| rgi | PC1 beta-lactamase (blaZ) | copy | ||
| amrfinderplus | sel31 | copy | ||
| amrfinderplus | sel32 | copy | ||
| amrfinderplus | blaI | copy | ||
| PGAG | protein rep | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | metalloregulator ArsR/SmtB family transcription factor | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 40 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | JX469834 | MOBV | 3069 | 3234 | plus | 100 | 100 | 2.42e-81 | 307 |
| replicon | CP002144 | rep_cluster_1017 | 2111 | 2999 | plus | 99.663 | 89 | 0 | 1626 |
| replicon | 000915__CP001784_00003 | rep_cluster_155 | 18513 | 20011 | minus | 94.263 | 99 | 0 | 2292 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |