Plasmid NZ_CP119123.1

Sequence

Nucleotide Information

Accession	NZ_CP119123.1
Description	Escherichia coli strain GENOMIC22-004 plasmid pCFSAN126949_02, complete sequence
Source	refseq
Topology	circular
Length	83235 bp
GC Content	0.51 %
Created at NCBI	March 10, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_029094485.1
Assembly Coverage	300

Biosample

Curated Collection Information

Accession	33426038

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Denmark
Original Query Type	name
Coordinates (Lat/Lon)	56.21/9.30
Address	Denmark

ECOSYSTEM

Original Query	EQA test strain
Classification	None
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP119123.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

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Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	iucB		copy
amrfinderplus	iucC		copy
amrfinderplus	iucA		copy
amrfinderplus	iucD		copy
PGAG	type II toxin-antitoxin system VapC family toxin		copy
PGAG	vapB		copy
PGAG	ccdA		copy
PGAG	ccdB		copy
PGAG	site-specific integrase		copy
PGAG	repE		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 83 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	AF250878	IncFIA	3010	3393	plus	88.083	99	7.670000000000001e-125	453
replicon	000136__AP014877_00014	IncFIA	27307	27755	plus	95.546	100	0	719
replicon	000136__AP014877_00014	IncFIA	40275	41132	plus	94.761	100	0	1336
replicon	000095__NZ_CP014273_00094	IncFIB	60301	61278	minus	98.569	100	0	1729
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 4 of 4 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2