Plasmid NZ_CP118984.1

Sequence

Nucleotide Information

Accession NZ_CP118984.1
Description Staphylococcus equorum strain DSM 20674 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 4846 bp
GC Content 0.30 %
Created at NCBI March 10, 2023



Assembly

Genome Data Information

Accession GCF_029024965.1
Assembly Coverage 5351


Biosample

Curated Collection Information
Accession 33336506

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query Horse,Type strain bacterial culture,Skin of horse
Classification cell_culture,host_associated,skin
Host-associated Taxon
  • Equus caballus (9796)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplustet(K)copy
PGAGreplication initiation factor domain-containing proteincopy
PGAGmobVcopy
PGAGCopG family transcriptional regulatorcopy
MOB-typerMOBVcopy
MOB-typerrep_cluster_1118copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 6 of 6 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseKM276080_00003MOBV19173125plus98.0151000806
replicon000379__NC_013452_00003rep_cluster_111840964846plus99.2019901354
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 2 of 2 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2