Plasmid NZ_CP118604.1

Sequence

Nucleotide Information

Accession NZ_CP118604.1
Description Escherichia coli strain NB4833 plasmid pNB4833-NDM-13, complete sequence
Source refseq
Topology circular
Length 60980 bp
GC Content 0.42 %
Created at NCBI March 3, 2023



Assembly

Genome Data Information

Accession GCF_028898885.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 31881052

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30N;121E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.00/121.00
Address Yongheshi, Shaoxing, Zhejiang, China

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query cervical cancer
DOID/SYMP
  • Cervical cancer (DOID:4362 )
    • A female reproductive organ cancer that is located_in the cervix.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP126508.1 See Comparison
NZ_AP027699.1 See Comparison
NZ_AP027682.1 See Comparison
NZ_AP027711.1 See Comparison
NZ_AP027715.1 See Comparison
NZ_AP027901.1 See Comparison
NZ_AP027675.1 See Comparison
NZ_MN232213.1 See Comparison
NZ_MN232208.1 See Comparison
NZ_MN232205.1 See Comparison
NZ_MN232211.1 See Comparison
NZ_MN232210.1 See Comparison
NZ_KY657476.1 See Comparison
NZ_MN232203.1 See Comparison
NZ_MN232198.1 See Comparison
NZ_MN232184.1 See Comparison
NZ_MN232179.1 See Comparison
NZ_MN232186.1 See Comparison
NZ_MN232185.1 See Comparison
NZ_MN232183.1 See Comparison
NZ_MN232201.1 See Comparison
NZ_MN232196.1 See Comparison
NZ_MN232182.1 See Comparison
NZ_MG825374.1 See Comparison
NZ_CP058303.1 See Comparison
NZ_CP055260.1 See Comparison
NZ_MG808035.1 See Comparison
NZ_KY795978.1 See Comparison
NZ_CP065423.1 See Comparison
NZ_KY120365.1 See Comparison
NZ_CP070924.1 See Comparison
NZ_CP016186.1 See Comparison
NZ_CP061128.1 See Comparison
NZ_MK574668.1 See Comparison
NZ_MN746292.1 See Comparison
NZ_LC511662.1 See Comparison
NZ_CP075067.1 See Comparison
NZ_OM839890.1 See Comparison
NZ_CP067343.1 See Comparison
NZ_CP118604.1 See Comparison
NZ_MZ277864.1 See Comparison
NZ_CP086608.1 See Comparison
NZ_AP027699.1 See Comparison
NZ_CP033254.2 See Comparison
NZ_CP126508.1 See Comparison
NZ_AP027715.1 See Comparison
NZ_AP027901.1 See Comparison
NZ_AP027675.1 See Comparison
NZ_AP027682.1 See Comparison
NZ_AP027711.1 See Comparison
NZ_MG825374.1 See Comparison
NZ_MN232213.1 See Comparison
NZ_MN232208.1 See Comparison
NZ_MN232205.1 See Comparison
NZ_MN232211.1 See Comparison
NZ_MN232210.1 See Comparison
NZ_KY657476.1 See Comparison
NZ_MN232203.1 See Comparison
NZ_MN232198.1 See Comparison
NZ_MN232184.1 See Comparison
NZ_MN232179.1 See Comparison
NZ_MN232186.1 See Comparison
NZ_MN232185.1 See Comparison
NZ_MN232183.1 See Comparison
NZ_MN232201.1 See Comparison
NZ_MN232196.1 See Comparison
NZ_MN232182.1 See Comparison
NZ_CP058303.1 See Comparison
NZ_CP055260.1 See Comparison
NZ_MG808035.1 See Comparison
NZ_KY120365.1 See Comparison
NZ_KY795978.1 See Comparison
NZ_CP016186.1 See Comparison
NZ_CP065423.1 See Comparison
NZ_CP070924.1 See Comparison
NZ_CP061128.1 See Comparison
NZ_OM839890.1 See Comparison
NZ_MN746292.1 See Comparison
NZ_MK574668.1 See Comparison
NZ_LC511662.1 See Comparison
NZ_MZ277864.1 See Comparison
NZ_CP067343.1 See Comparison
NZ_CP086608.1 See Comparison
NZ_CP126508.1 See Comparison
NZ_CP075067.1 See Comparison
NZ_CP033254.2 See Comparison
NZ_AP027901.1 See Comparison
NZ_AP027675.1 See Comparison
NZ_KY657476.1 See Comparison
NZ_AP027699.1 See Comparison
NZ_AP027682.1 See Comparison
NZ_AP027711.1 See Comparison
NZ_AP027715.1 See Comparison
NZ_MN232203.1 See Comparison
NZ_MN232198.1 See Comparison
NZ_MN232184.1 See Comparison
NZ_MN232179.1 See Comparison
NZ_MN232186.1 See Comparison
NZ_MN232185.1 See Comparison
NZ_MN232183.1 See Comparison
NZ_MN232201.1 See Comparison
NZ_MN232213.1 See Comparison
NZ_MN232196.1 See Comparison
NZ_MN232182.1 See Comparison
NZ_MN232208.1 See Comparison
NZ_CP058303.1 See Comparison
NZ_MN232205.1 See Comparison
NZ_MN232211.1 See Comparison
NZ_MN232210.1 See Comparison
NZ_CP055260.1 See Comparison
NZ_KY120365.1 See Comparison
NZ_KY795978.1 See Comparison
NZ_MG825374.1 See Comparison
NZ_MG808035.1 See Comparison
NZ_CP070924.1 See Comparison
NZ_CP016186.1 See Comparison
NZ_CP065423.1 See Comparison
NZ_CP061128.1 See Comparison
NZ_MN746292.1 See Comparison
NZ_MZ277864.1 See Comparison
NZ_MK574668.1 See Comparison
NZ_LC511662.1 See Comparison
NZ_OM839890.1 See Comparison
NZ_CP086608.1 See Comparison
NZ_CP067343.1 See Comparison
NZ_AP027675.1 See Comparison
NZ_CP033254.2 See Comparison
NZ_CP126508.1 See Comparison
NZ_CP075067.1 See Comparison
NZ_AP027699.1 See Comparison
NZ_AP027682.1 See Comparison
NZ_AP027711.1 See Comparison
NZ_AP027715.1 See Comparison
NZ_AP027901.1 See Comparison
NZ_CP058303.1 See Comparison
NZ_MN232213.1 See Comparison
NZ_MN232208.1 See Comparison
NZ_MN232205.1 See Comparison
NZ_MN232211.1 See Comparison
NZ_MN232210.1 See Comparison
NZ_KY657476.1 See Comparison
NZ_MN232203.1 See Comparison
NZ_MN232198.1 See Comparison
NZ_MN232184.1 See Comparison
NZ_MN232179.1 See Comparison
NZ_MN232186.1 See Comparison
NZ_MN232185.1 See Comparison
NZ_MN232183.1 See Comparison
NZ_MN232201.1 See Comparison
NZ_MN232196.1 See Comparison
NZ_MN232182.1 See Comparison
NZ_MG808035.1 See Comparison
NZ_CP055260.1 See Comparison
NZ_CP065423.1 See Comparison
NZ_MG825374.1 See Comparison
NZ_KY120365.1 See Comparison
NZ_CP070924.1 See Comparison
NZ_KY795978.1 See Comparison
NZ_CP016186.1 See Comparison
NZ_CP061128.1 See Comparison
NZ_MN746292.1 See Comparison
NZ_MZ277864.1 See Comparison
NZ_OM839890.1 See Comparison
NZ_MK574668.1 See Comparison
NZ_LC511662.1 See Comparison
NZ_CP067343.1 See Comparison
NZ_CP086608.1 See Comparison
NZ_CP075067.1 See Comparison
NZ_CP033254.2 See Comparison
NZ_AP027699.1 See Comparison
NZ_CP126508.1 See Comparison
NZ_AP027675.1 See Comparison
NZ_AP027682.1 See Comparison
NZ_AP027711.1 See Comparison
NZ_AP027715.1 See Comparison
NZ_AP027901.1 See Comparison
NZ_KY657476.1 See Comparison
NZ_MN232203.1 See Comparison
NZ_MN232198.1 See Comparison
NZ_MN232184.1 See Comparison
NZ_MN232179.1 See Comparison
NZ_MN232186.1 See Comparison
NZ_MN232185.1 See Comparison
NZ_MN232183.1 See Comparison
NZ_MN232201.1 See Comparison
NZ_MN232196.1 See Comparison
NZ_MN232182.1 See Comparison
NZ_CP058303.1 See Comparison
NZ_MN232213.1 See Comparison
NZ_MN232208.1 See Comparison
NZ_MN232205.1 See Comparison
NZ_MN232211.1 See Comparison
NZ_MN232210.1 See Comparison
NZ_CP055260.1 See Comparison
NZ_MG808035.1 See Comparison
NZ_MG825374.1 See Comparison
NZ_KY795978.1 See Comparison
NZ_KY120365.1 See Comparison
NZ_CP016186.1 See Comparison
NZ_CP070924.1 See Comparison
NZ_CP065423.1 See Comparison
NZ_CP061128.1 See Comparison
NZ_MZ277864.1 See Comparison
NZ_MN746292.1 See Comparison
NZ_LC511662.1 See Comparison
NZ_MK574668.1 See Comparison
NZ_OM839890.1 See Comparison
NZ_CP086608.1 See Comparison
NZ_MN232213.1 See Comparison
NZ_CP067343.1 See Comparison
NZ_CP075067.1 See Comparison
NZ_CP033254.2 See Comparison
NZ_CP126508.1 See Comparison
NZ_MN232184.1 See Comparison
NZ_MN232179.1 See Comparison
NZ_MN232186.1 See Comparison
NZ_MN232185.1 See Comparison
NZ_MN232183.1 See Comparison
NZ_MN232201.1 See Comparison
NZ_MN232196.1 See Comparison
NZ_MN232182.1 See Comparison
NZ_AP027699.1 See Comparison
NZ_AP027682.1 See Comparison
NZ_AP027711.1 See Comparison
NZ_AP027715.1 See Comparison
NZ_AP027901.1 See Comparison
NZ_AP027675.1 See Comparison
NZ_MN232208.1 See Comparison
NZ_MN232205.1 See Comparison
NZ_MN232211.1 See Comparison
NZ_MN232210.1 See Comparison
NZ_KY657476.1 See Comparison
NZ_MN232203.1 See Comparison
NZ_MN232198.1 See Comparison
NZ_KY795978.1 See Comparison
NZ_MG808035.1 See Comparison
NZ_CP058303.1 See Comparison
NZ_CP055260.1 See Comparison
NZ_MG825374.1 See Comparison
NZ_KY120365.1 See Comparison
NZ_CP016186.1 See Comparison
NZ_CP067343.1 See Comparison
NZ_MK574668.1 See Comparison
NZ_LC511662.1 See Comparison
NZ_MZ277864.1 See Comparison
NZ_CP086608.1 See Comparison
NZ_CP070924.1 See Comparison
NZ_CP065423.1 See Comparison
NZ_CP061128.1 See Comparison
NZ_MN746292.1 See Comparison
NZ_OM839890.1 See Comparison
NZ_AP027699.1 See Comparison
NZ_CP033254.2 See Comparison
NZ_CP075067.1 See Comparison
NZ_CP126508.1 See Comparison
NZ_AP027682.1 See Comparison
NZ_AP027711.1 See Comparison
NZ_AP027715.1 See Comparison
NZ_AP027901.1 See Comparison
NZ_AP027675.1 See Comparison
NZ_CP058303.1 See Comparison
NZ_MN232213.1 See Comparison
NZ_MN232208.1 See Comparison
NZ_MN232205.1 See Comparison
NZ_MN232211.1 See Comparison
NZ_MN232210.1 See Comparison
NZ_KY657476.1 See Comparison
NZ_MN232203.1 See Comparison
NZ_MN232198.1 See Comparison
NZ_MN232184.1 See Comparison
NZ_MN232179.1 See Comparison
NZ_MN232186.1 See Comparison
NZ_MN232185.1 See Comparison
NZ_MN232183.1 See Comparison
NZ_MN232201.1 See Comparison
NZ_MN232196.1 See Comparison
NZ_MN232182.1 See Comparison
NZ_CP055260.1 See Comparison
NZ_MG808035.1 See Comparison
NZ_MG825374.1 See Comparison
NZ_KY120365.1 See Comparison
NZ_KY795978.1 See Comparison
NZ_MK574668.1 See Comparison
NZ_CP070924.1 See Comparison
NZ_CP065423.1 See Comparison
NZ_CP061128.1 See Comparison
NZ_CP016186.1 See Comparison
NZ_MN746292.1 See Comparison
NZ_CP033254.2 See Comparison
NZ_LC511662.1 See Comparison
NZ_OM839890.1 See Comparison
NZ_CP086608.1 See Comparison
NZ_MZ277864.1 See Comparison
NZ_CP067343.1 See Comparison
NZ_CP075067.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2