Plasmid NZ_CP117662.1

Sequence

Nucleotide Information

Accession	NZ_CP117662.1
Description	Escherichia albertii strain BIA_13 plasmid pEA13_3, complete sequence
Source	refseq
Topology	circular
Length	71169 bp
GC Content	0.47 %
Created at NCBI	Feb. 18, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia albertii (208962)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_albertii (208962)
Strain

Assembly

Genome Data Information

Accession	GCF_028622395.1
Assembly Coverage	287

Biosample

Curated Collection Information

Accession	33094093

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	53.580728766666674;21.8779313344639
Original Query Type	coordinates
Coordinates (Lat/Lon)	53.58/21.88
Address	Borki, gmina Pisz, Pisz County, Warmian-Masurian Voivodeship, 12-200, Poland

ECOSYSTEM

Original Query	Grus grus,whole organism
Classification	host_associated
Host-associated Taxon	Grus grus (40816)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP117662.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	iucB		copy
amrfinderplus	iucC		copy
amrfinderplus	iucD		copy
PGAG	repA		copy
PGAG	subtilase family AB5 toxin binding subunit		copy
PGAG	enterotoxin A family protein		copy
PGAG	plasmid partitioning/stability family protein		copy
PGAG	plasmid segregation protein ParM		copy
PGAG	molecular chaperone GroEL		copy
PGAG	ParA family protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 45 entries

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	CP010124_00057	IncI1	1	1023	plus	91.406	100	0	1402
replicon	000095__NZ_CP014273_00094	IncFIB	13603	14580	plus	98.875	100	0	1746
replicon	JN232517	IncFII	70914	71169	minus	94.942	99	1.81e-109	401
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 3 of 3 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2