Plasmid NZ_CP117369.1

Sequence

Nucleotide Information

Accession NZ_CP117369.1
Description Salmonella enterica subsp. enterica serovar Dublin strain RM079 plasmid pRM079_2, complete sequence
Source refseq
Topology circular
Length 73152 bp
GC Content 0.49 %
Created at NCBI March 3, 2023



Assembly

Genome Data Information

Accession GCF_028893395.1
Assembly Coverage 132


Biosample

Curated Collection Information
Accession 32950788

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Nebraska
Original Query Type name
Coordinates (Lat/Lon) 41.74/-99.59
Address USA,Nebraska

ECOSYSTEM
Original Query Bos taurus,lung
Classification host_associated,lung,respiratory_system
Host-associated Taxon

DISEASE
Original Query Pneumonia
DOID/SYMP
  • Pneumonia (DOID:552 )
    • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP063758.1 See Comparison
NZ_CP117364.1 See Comparison
NZ_CP117375.1 See Comparison
NZ_CP117353.1 See Comparison
NZ_CP117342.1 See Comparison
NZ_CP117361.1 See Comparison
CP082405.1 See Comparison
NZ_CP032386.1 See Comparison
CP063758.1 See Comparison
NZ_CP117364.1 See Comparison
NZ_CP117375.1 See Comparison
NZ_CP117353.1 See Comparison
NZ_CP117342.1 See Comparison
NZ_CP117361.1 See Comparison
NZ_CP117361.1 See Comparison
CP082405.1 See Comparison
NZ_CP032386.1 See Comparison
CP063758.1 See Comparison
NZ_CP032386.1 See Comparison
NZ_CP117364.1 See Comparison
NZ_CP117375.1 See Comparison
NZ_CP117353.1 See Comparison
NZ_CP117342.1 See Comparison
CP082405.1 See Comparison
CP063758.1 See Comparison
NZ_CP117364.1 See Comparison
NZ_CP117375.1 See Comparison
NZ_CP117353.1 See Comparison
NZ_CP117342.1 See Comparison
NZ_CP117361.1 See Comparison
NZ_CP117364.1 See Comparison
CP082405.1 See Comparison
NZ_CP032386.1 See Comparison
CP063758.1 See Comparison
NZ_CP117375.1 See Comparison
NZ_CP117353.1 See Comparison
NZ_CP117342.1 See Comparison
NZ_CP117361.1 See Comparison
CP063758.1 See Comparison
CP082405.1 See Comparison
NZ_CP032386.1 See Comparison
NZ_CP117364.1 See Comparison
NZ_CP117375.1 See Comparison
NZ_CP117353.1 See Comparison
NZ_CP117342.1 See Comparison
NZ_CP117361.1 See Comparison
NZ_CP117364.1 See Comparison
NZ_CP032386.1 See Comparison
CP063758.1 See Comparison
CP082405.1 See Comparison
NZ_CP117375.1 See Comparison
NZ_CP117353.1 See Comparison
NZ_CP117369.1 See Comparison
NZ_CP117342.1 See Comparison
NZ_CP117361.1 See Comparison
CP082405.1 See Comparison
NZ_CP032386.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusspvDcopy
PGAGrepAcopy
PGAGtransposasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGfaeHcopy
PGAGK88 minor fimbrial subunit faeIcopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 91 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000114__CP015527IncFII1882plus98.75310001568
replicon000217__NC_019106_00041IncX13687137317minus1001000826
repliconLS992172_00069IncFII7288873152minus83.704864.96e-61241
relaxaseNC_019096_00001MOBP4293744100plus98.4541000790
relaxaseCP030220_00041MOBF6558169843plus88.2028102463
mate-pair-formationNC_023277_00163MPF_T4669748847plus99.86110001457
mate-pair-formationNC_013503_00034MPF_T4985750987plus98.9391000652
mate-pair-formationNC_019067_00043MPF_T5123551945plus99.5781004.87e-137431
mate-pair-formationNC_010860_00022MPF_T5195352879plus98.0581000625
mate-pair-formationNC_017624_00009MPF_T5511956915plus98.8319801186
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 10 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2