Plasmid NZ_CP117356.1

Sequence

Nucleotide Information

Accession NZ_CP117356.1
Description Salmonella enterica subsp. enterica serovar Dublin strain RM099 plasmid pRM099_2, complete sequence
Source refseq
Topology circular
Length 75391 bp
GC Content 0.49 %
Created at NCBI March 3, 2023



Assembly

Genome Data Information

Accession GCF_028893275.1
Assembly Coverage 99


Biosample

Curated Collection Information
Accession 32950794

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Nebraska
Original Query Type name
Coordinates (Lat/Lon) 41.74/-99.59
Address USA,Nebraska

ECOSYSTEM
Original Query Bos taurus,Pooled lung, small and large intestine
Classification gastrointestinal_system,host_associated,lung,respiratory_system,small_gut
Host-associated Taxon

DISEASE
Original Query Pneumonia
DOID/SYMP
  • Pneumonia (DOID:552 )
    • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP082405.1 See Comparison
NZ_CP075114.1 See Comparison
NZ_CP019180.1 See Comparison
NC_011204.1 See Comparison
NC_010422.1 See Comparison
NZ_CP156900.1 See Comparison
NZ_CP032447.1 See Comparison
NZ_CP032381.1 See Comparison
NZ_CP032392.1 See Comparison
NZ_CP032386.1 See Comparison
NZ_CP030208.1 See Comparison
NZ_CP156715.1 See Comparison
CP082405.1 See Comparison
NZ_CP117364.1 See Comparison
NZ_CP117375.1 See Comparison
NZ_CP117353.1 See Comparison
NZ_CP117342.1 See Comparison
NZ_CP117361.1 See Comparison
NZ_CP117345.1 See Comparison
CP063758.1 See Comparison
NZ_CP075114.1 See Comparison
NC_011204.1 See Comparison
NZ_CP019180.1 See Comparison
NC_010422.1 See Comparison
NZ_CP032447.1 See Comparison
NZ_CP032381.1 See Comparison
NZ_CP032392.1 See Comparison
NZ_CP032386.1 See Comparison
NZ_CP030208.1 See Comparison
NZ_CP117364.1 See Comparison
CP063758.1 See Comparison
NZ_CP117361.1 See Comparison
NZ_CP117345.1 See Comparison
NZ_CP156900.1 See Comparison
NZ_CP156715.1 See Comparison
NZ_CP117375.1 See Comparison
NZ_CP117353.1 See Comparison
NZ_CP117342.1 See Comparison
NC_011204.1 See Comparison
CP082405.1 See Comparison
NZ_CP075114.1 See Comparison
NZ_CP019180.1 See Comparison
NC_010422.1 See Comparison
CP082405.1 See Comparison
NZ_CP032447.1 See Comparison
NZ_CP032381.1 See Comparison
NZ_CP032392.1 See Comparison
NZ_CP032386.1 See Comparison
NZ_CP156900.1 See Comparison
NZ_CP156715.1 See Comparison
NZ_CP030208.1 See Comparison
CP063758.1 See Comparison
NZ_CP117364.1 See Comparison
NZ_CP117375.1 See Comparison
NZ_CP117353.1 See Comparison
NZ_CP117342.1 See Comparison
NZ_CP117361.1 See Comparison
NZ_CP117345.1 See Comparison
NZ_CP032447.1 See Comparison
NZ_CP075114.1 See Comparison
NZ_CP019180.1 See Comparison
NC_011204.1 See Comparison
NC_010422.1 See Comparison
NZ_CP032381.1 See Comparison
NZ_CP032392.1 See Comparison
NZ_CP032386.1 See Comparison
NZ_CP030208.1 See Comparison
CP063758.1 See Comparison
NZ_CP156900.1 See Comparison
NZ_CP156715.1 See Comparison
NC_011204.1 See Comparison
NZ_CP117364.1 See Comparison
NZ_CP117375.1 See Comparison
NZ_CP117353.1 See Comparison
NZ_CP117342.1 See Comparison
NZ_CP117361.1 See Comparison
NZ_CP117345.1 See Comparison
NZ_CP075114.1 See Comparison
NZ_CP019180.1 See Comparison
CP082405.1 See Comparison
NC_010422.1 See Comparison
NZ_CP032447.1 See Comparison
NZ_CP032381.1 See Comparison
NZ_CP032392.1 See Comparison
NZ_CP030208.1 See Comparison
NZ_CP032386.1 See Comparison
CP063758.1 See Comparison
NZ_CP156900.1 See Comparison
NZ_CP156715.1 See Comparison
NC_011204.1 See Comparison
NZ_CP117364.1 See Comparison
NZ_CP117375.1 See Comparison
NZ_CP117353.1 See Comparison
NZ_CP117356.1 See Comparison
NZ_CP117342.1 See Comparison
NZ_CP117361.1 See Comparison
NZ_CP117345.1 See Comparison
CP082405.1 See Comparison
NZ_CP075114.1 See Comparison
NZ_CP019180.1 See Comparison
NC_010422.1 See Comparison
NZ_CP032447.1 See Comparison
NZ_CP032381.1 See Comparison
NZ_CP032392.1 See Comparison
NZ_CP032386.1 See Comparison
NZ_CP156715.1 See Comparison
NZ_CP030208.1 See Comparison
NZ_CP117364.1 See Comparison
NZ_CP117375.1 See Comparison
NZ_CP117353.1 See Comparison
NZ_CP117342.1 See Comparison
NZ_CP117361.1 See Comparison
NZ_CP117345.1 See Comparison
NZ_CP156900.1 See Comparison
CP063758.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore