Plasmid NZ_CP116320.1

Sequence

Nucleotide Information

Accession	NZ_CP116320.1
Description	Bacillus thuringiensis strain Lip plasmid pLip7635, complete sequence
Source	refseq
Topology	circular
Length	7635 bp
GC Content	0.32 %
Created at NCBI	April 3, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Bacillus thuringiensis (1428)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacillota (1239)
Class	Bacilli (91061)
Order	Bacillales (1385)
Family	Bacillaceae (186817)
Genus	Bacillus (1386)
Species	Bacillus_thuringiensis (1428)
Strain

Assembly

Genome Data Information

Accession	GCF_028356555.1
Assembly Coverage	20

Biosample

Curated Collection Information

Accession	32746259

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Lebanon
Original Query Type	name
Coordinates (Lat/Lon)	33.88/35.84
Address	Lebanon

ECOSYSTEM

Original Query	soil sample,soil sample
Classification	soil
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP116333.1	See Comparison
CP113390.1	See Comparison
CP113380.1	See Comparison
CP113370.1	See Comparison
NZ_ON016105.1	See Comparison
NZ_CP072703.1	See Comparison
NZ_ON470175.1	See Comparison
NZ_AP022984.1	See Comparison
NZ_CP091119.1	See Comparison
NZ_CP091118.1	See Comparison
NZ_CP004867.1	See Comparison
NZ_CP083126.1	See Comparison
NZ_CP004879.1	See Comparison
NC_011796.1	See Comparison
NC_020243.1	See Comparison
NC_018882.1	See Comparison
CP113390.1	See Comparison
NZ_CP116333.1	See Comparison
CP113380.1	See Comparison
CP113370.1	See Comparison
NZ_ON470175.1	See Comparison
NZ_ON016105.1	See Comparison
NZ_CP072703.1	See Comparison
CP113390.1	See Comparison
NZ_AP022984.1	See Comparison
NZ_CP091119.1	See Comparison
NZ_CP091118.1	See Comparison
NZ_CP083126.1	See Comparison
NZ_CP004879.1	See Comparison
NC_020243.1	See Comparison
NC_011796.1	See Comparison
NZ_CP116333.1	See Comparison
NZ_CP004867.1	See Comparison
NC_018882.1	See Comparison
CP113380.1	See Comparison
CP113370.1	See Comparison
NZ_CP072703.1	See Comparison
NZ_ON016105.1	See Comparison
NZ_AP022984.1	See Comparison
NZ_ON470175.1	See Comparison
NZ_CP091119.1	See Comparison
NZ_CP091118.1	See Comparison
NZ_CP083126.1	See Comparison
NZ_CP004867.1	See Comparison
NC_018882.1	See Comparison
NZ_CP004879.1	See Comparison
NZ_CP004879.1	See Comparison
NC_020243.1	See Comparison
NC_011796.1	See Comparison
NZ_CP116333.1	See Comparison
NZ_ON016105.1	See Comparison
NZ_CP083126.1	See Comparison
CP113390.1	See Comparison
CP113380.1	See Comparison
CP113370.1	See Comparison
NZ_CP072703.1	See Comparison
NZ_ON470175.1	See Comparison
NZ_AP022984.1	See Comparison
NZ_CP091119.1	See Comparison
NZ_CP091118.1	See Comparison
NC_020243.1	See Comparison
NZ_CP004867.1	See Comparison
NC_011796.1	See Comparison
NZ_ON470175.1	See Comparison
NC_018882.1	See Comparison
NZ_CP116333.1	See Comparison
CP113390.1	See Comparison
CP113380.1	See Comparison
CP113370.1	See Comparison
NZ_ON016105.1	See Comparison
NZ_CP072703.1	See Comparison
NZ_CP083126.1	See Comparison
NZ_AP022984.1	See Comparison
NZ_CP091119.1	See Comparison
NZ_CP091118.1	See Comparison
NZ_CP004867.1	See Comparison
NZ_CP004879.1	See Comparison
NC_020243.1	See Comparison
NZ_ON016105.1	See Comparison
NC_011796.1	See Comparison
NC_018882.1	See Comparison
NZ_CP116333.1	See Comparison
CP113390.1	See Comparison
CP113380.1	See Comparison
CP113370.1	See Comparison
NZ_AP022984.1	See Comparison
NZ_CP072703.1	See Comparison
NZ_ON470175.1	See Comparison
NZ_CP091119.1	See Comparison
NZ_CP091118.1	See Comparison
NC_018882.1	See Comparison
NZ_CP004879.1	See Comparison
NC_020243.1	See Comparison
NZ_CP083126.1	See Comparison
NZ_CP004867.1	See Comparison
NZ_CP116333.1	See Comparison
NC_011796.1	See Comparison
NZ_CP116320.1	See Comparison
CP113390.1	See Comparison
CP113380.1	See Comparison
CP113370.1	See Comparison
NZ_ON016105.1	See Comparison
NZ_AP022984.1	See Comparison
NZ_CP072703.1	See Comparison
NZ_ON470175.1	See Comparison
NZ_CP091119.1	See Comparison
NZ_CP091118.1	See Comparison
NZ_CP083126.1	See Comparison
NZ_CP004879.1	See Comparison
NC_020243.1	See Comparison
NZ_CP004867.1	See Comparison
NC_018882.1	See Comparison
NC_011796.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2