Plasmid NZ_CP115702.1

Sequence

Nucleotide Information

Accession	NZ_CP115702.1
Description	Klebsiella pneumoniae strain 2020CK-00201 plasmid unnamed1, complete sequence
Source	refseq
Topology	circular
Length	68167 bp
GC Content	0.55 %
Created at NCBI	Jan. 18, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (573)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Assembly

Genome Data Information

Accession	GCF_027886565.1
Assembly Coverage	20

Biosample

Curated Collection Information

Accession	15907136

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	USA
Original Query Type	name
Coordinates (Lat/Lon)	39.78/-100.45
Address	USA

ECOSYSTEM

Original Query	Homo sapiens,Wound/Abscess
Classification	abscess,host_associated,wound
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP115702.1	See Comparison

Plasmid Visualization

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Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	ncrC		copy
amrfinderplus	ncrA		copy
amrfinderplus	ncrB		copy
amrfinderplus	ncrY		copy
amrfinderplus	aac(6')-Ib		copy
amrfinderplus	blaKPC-3		copy
rgi	AAC(6')-Ib10		copy
rgi	aadA15		copy
PGAG	repA		copy
PGAG	hypothetical protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 73 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	000129__CP018340	IncFII	67929	68163	minus	88.559	100	1.6999999999999998e-74	285
relaxase	CP024544_00079	MOBF	57419	62677	plus	97.661	100	0	3348
mate-pair-formation	NC_021502_00150	MPF_T	55119	57416	plus	90.272	100	0	1309
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 3 of 3 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2