Plasmid NZ_CP115684.1

Sequence

Nucleotide Information

Accession	NZ_CP115684.1
Description	Klebsiella oxytoca strain 2020CK-00200 plasmid unnamed5, complete sequence
Source	refseq
Topology	circular
Length	57856 bp
GC Content	0.52 %
Created at NCBI	Feb. 6, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella oxytoca (571)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_oxytoca (571)
Strain

Biosample

Curated Collection Information

Accession	15907135

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	USA
Original Query Type	name
Coordinates (Lat/Lon)	39.78/-100.45
Address	USA

ECOSYSTEM

Original Query	Homo sapiens,blood
Classification	blood,circulatory_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP124770.1	See Comparison
CP124770.1	See Comparison
CP124770.1	See Comparison
NZ_CP115684.1	See Comparison
CP124770.1	See Comparison
CP124770.1	See Comparison
CP124770.1	See Comparison
CP124770.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

rgi	AAC(6')-Ib-cr6		copy
amrfinderplus	qnrS1		copy
amrfinderplus	qacEdelta1		copy
amrfinderplus	aac(6')-Ib-cr5		copy
amrfinderplus	tet(A)		copy
amrfinderplus	sul1		copy
amrfinderplus	blaLAP-2		copy
amrfinderplus	catB3		copy
amrfinderplus	blaOXA-1		copy
PGAG	replication initiation protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 80 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

relaxase	NC_015599_00019	MOBF	39427	42603	minus	100	98	0	2035
mate-pair-formation	NC_009131_00030	MPF_T	25400	25714	plus	100	100	6.62e-63	212
mate-pair-formation	NC_011617_00041	MPF_T	25717	28314	plus	100	100	0	1811
mate-pair-formation	NC_014368_00014	MPF_T	29299	30336	plus	99.422	100	3.38e-180	560
mate-pair-formation	NC_007682_00044	MPF_T	30558	31253	plus	100	100	1e-154	481
mate-pair-formation	NC_008612_00190	MPF_T	31267	32148	plus	100	100	1.2e-176	547
mate-pair-formation	NC_022375_00024	MPF_T	42606	44132	minus	99.411	100	0	993
oriT	NZ_CP016035	MOBF	44612	44879	minus	100	100	8.36e-138	496
replicon	000153__NC_019087_00001	IncN	1	720	plus	99.722	100	0	1319
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 9 of 9 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2