Plasmid NZ_CP115644.1

Sequence

Nucleotide Information

Accession NZ_CP115644.1
Description Acinetobacter baumannii strain 2022CK-00317 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 107426 bp
GC Content 0.43 %
Created at NCBI Jan. 10, 2023



Assembly

Genome Data Information

Accession GCF_023615345.1
Assembly Coverage 31


Biosample

Curated Collection Information
Accession 28788543

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

CP081146.1 See Comparison
NZ_CP035046.1 See Comparison
NZ_CP027608.1 See Comparison
CP137931.1 See Comparison
NZ_CP131951.1 See Comparison
NZ_CP096896.1 See Comparison
NZ_CP115638.1 See Comparison
NZ_CP115646.1 See Comparison
NZ_CP115640.1 See Comparison
NZ_CP115642.1 See Comparison
NZ_CP156934.1 See Comparison
NZ_CP155459.1 See Comparison
NZ_CP155456.1 See Comparison
NZ_CP155722.1 See Comparison
NZ_CP155477.1 See Comparison
NZ_CP149832.1 See Comparison
NZ_CP143349.1 See Comparison
NZ_CP140436.1 See Comparison
NZ_CP140432.1 See Comparison
CP081146.1 See Comparison
NZ_CP035046.1 See Comparison
NZ_CP140436.1 See Comparison
NZ_CP027608.1 See Comparison
NZ_CP096896.1 See Comparison
NZ_CP156934.1 See Comparison
NZ_CP155459.1 See Comparison
NZ_CP155456.1 See Comparison
NZ_CP155722.1 See Comparison
NZ_CP143349.1 See Comparison
CP137931.1 See Comparison
NZ_CP131951.1 See Comparison
NZ_CP115638.1 See Comparison
NZ_CP115646.1 See Comparison
NZ_CP115640.1 See Comparison
NZ_CP115642.1 See Comparison
NZ_CP155477.1 See Comparison
NZ_CP149832.1 See Comparison
NZ_CP027608.1 See Comparison
NZ_CP140432.1 See Comparison
CP081146.1 See Comparison
NZ_CP035046.1 See Comparison
NZ_CP096896.1 See Comparison
CP137931.1 See Comparison
NZ_CP131951.1 See Comparison
NZ_CP156934.1 See Comparison
NZ_CP115638.1 See Comparison
NZ_CP115646.1 See Comparison
NZ_CP115640.1 See Comparison
NZ_CP115642.1 See Comparison
NZ_CP155477.1 See Comparison
NZ_CP155459.1 See Comparison
NZ_CP155456.1 See Comparison
NZ_CP155722.1 See Comparison
NZ_CP143349.1 See Comparison
NZ_CP149832.1 See Comparison
NZ_CP140436.1 See Comparison
CP081146.1 See Comparison
NZ_CP140432.1 See Comparison
NZ_CP035046.1 See Comparison
CP137931.1 See Comparison
NZ_CP027608.1 See Comparison
NZ_CP131951.1 See Comparison
NZ_CP115638.1 See Comparison
NZ_CP096896.1 See Comparison
NZ_CP115646.1 See Comparison
NZ_CP115640.1 See Comparison
NZ_CP115642.1 See Comparison
NZ_CP149832.1 See Comparison
NZ_CP156934.1 See Comparison
NZ_CP155459.1 See Comparison
NZ_CP155456.1 See Comparison
NZ_CP155722.1 See Comparison
NZ_CP155477.1 See Comparison
NZ_CP140432.1 See Comparison
NZ_CP140436.1 See Comparison
NZ_CP143349.1 See Comparison
CP137931.1 See Comparison
NZ_CP035046.1 See Comparison
NZ_CP027608.1 See Comparison
CP081146.1 See Comparison
NZ_CP115642.1 See Comparison
NZ_CP131951.1 See Comparison
NZ_CP096896.1 See Comparison
NZ_CP149832.1 See Comparison
NZ_CP156934.1 See Comparison
NZ_CP155459.1 See Comparison
NZ_CP155456.1 See Comparison
NZ_CP155722.1 See Comparison
NZ_CP115638.1 See Comparison
NZ_CP115646.1 See Comparison
NZ_CP115640.1 See Comparison
NZ_CP155477.1 See Comparison
CP081146.1 See Comparison
NZ_CP140436.1 See Comparison
NZ_CP143349.1 See Comparison
NZ_CP140432.1 See Comparison
NZ_CP027608.1 See Comparison
NZ_CP035046.1 See Comparison
NZ_CP115638.1 See Comparison
CP137931.1 See Comparison
NZ_CP131951.1 See Comparison
NZ_CP096896.1 See Comparison
NZ_CP115646.1 See Comparison
NZ_CP115640.1 See Comparison
NZ_CP115644.1 See Comparison
NZ_CP156934.1 See Comparison
NZ_CP115642.1 See Comparison
NZ_CP155477.1 See Comparison
NZ_CP155459.1 See Comparison
NZ_CP155456.1 See Comparison
NZ_CP155722.1 See Comparison
NZ_CP140436.1 See Comparison
NZ_CP143349.1 See Comparison
NZ_CP149832.1 See Comparison
NZ_CP096896.1 See Comparison
NZ_CP140432.1 See Comparison
CP081146.1 See Comparison
NZ_CP035046.1 See Comparison
NZ_CP131951.1 See Comparison
NZ_CP027608.1 See Comparison
CP137931.1 See Comparison
NZ_CP156934.1 See Comparison
NZ_CP155459.1 See Comparison
NZ_CP155456.1 See Comparison
NZ_CP155722.1 See Comparison
NZ_CP115638.1 See Comparison
NZ_CP115646.1 See Comparison
NZ_CP115640.1 See Comparison
NZ_CP115642.1 See Comparison
NZ_CP143349.1 See Comparison
NZ_CP155477.1 See Comparison
NZ_CP149832.1 See Comparison
NZ_CP140432.1 See Comparison
NZ_CP140436.1 See Comparison


Identical Plasmids

100% Sequence Identity




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2