Plasmid NZ_CP114132.1

Sequence

Nucleotide Information

Accession NZ_CP114132.1
Description Escherichia coli strain NJS001 plasmid pNJS001-2, complete sequence
Source refseq
Topology circular
Length 438722 bp
GC Content 0.50 %
Created at NCBI Dec. 19, 2022



Assembly

Genome Data Information

Accession GCF_026967655.1
Assembly Coverage 171.3


Biosample

Curated Collection Information
Accession 30630702

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.14N;118.22E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.14/118.22
Address Eqiao, Yijiang District, Wuhu, Anhui, China

ECOSYSTEM
Original Query pig,gut
Classification gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query diarrhea
DOID/SYMP
  • Diarrhea (DOID:13250 )
    • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP114132.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusespJcopy
rgimdtAcopy
rgimdtCcopy
rgimdtBcopy
rgibaeRcopy
rgiugdcopy
amrfinderplusstxB2copy
amrfinderplusstxA2copy
PGAGcapsid cement proteincopy
PGAGDNA breaking-rejoining proteincopy
SourceElement NameDisplaySequenceFavorite
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_021819_00066MOBP169182169913plus80.7381002.39e-131417
relaxaseNC_021819_00066MOBP276833277177minus86.0871002.1800000000000003e-124208
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 2 of 2 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2