Plasmid NZ_CP110964.1

Sequence

Nucleotide Information

Accession NZ_CP110964.1
Description Klebsiella pneumoniae subsp. pneumoniae strain LC-422/19 plasmid pIT-422-FIIK2_CZA, complete sequence
Source refseq
Topology circular
Length 131583 bp
GC Content 0.54 %
Created at NCBI Nov. 23, 2022



Assembly

Genome Data Information

Accession GCF_026248005.1
Assembly Coverage 80


Biosample

Curated Collection Information
Accession 29934023

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 45.852176N;9.414998E
Original Query Type coordinates
Coordinates (Lat/Lon) 45.85/9.41
Address Ospedale Alessandro Manzoni, 9;11, Via dell'Eremo, Belledo, Lecco, Lombardy, 23900, Italy

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP110964.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiOXA-9copy
rgiOXA-9copy
rgiOXA-9copy
amrfinderplusblaKPC-3copy
amrfinderplusblaKPC-3copy
amrfinderplusblaTEM-1copy
amrfinderplusblaTEM-1copy
PGAGDUF1380 domain-containing proteincopy
PGAGhypothetical proteincopy
PGAGDNA methylasecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 150 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_021231_00058MOBF7907284330minus97.03410003331
relaxaseCP035180_00077MOBF8434285097minus92.46980372
mate-pair-formationNC_021502_00131MPF_T101328103964minus96.92810001759
mate-pair-formationNC_019389_00068MPF_F106624107139minus98.837892.02e-109350
mate-pair-formationNC_023332_00154MPF_F107340108761minus99.3671000790
mate-pair-formationNC_014312_00118MPF_F108764109501minus99.5931001.2499999999999998e-159496
mate-pair-formationNC_014312_00116MPF_F110077110379minus1001004.22e-61207
replicon000097__NC_025166_00051IncFIB56976593plus10010001657
repliconCP033468_00001rep_cluster_21835241153238minus82.289960715
replicon000129__CP018340IncFII5327353507plus99.5741007.44e-118429
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2